Factsheet for Os02t0792800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05942	Sorghum	plastid	84.04	84.2
Zm00001d018358_P001	Maize	plastid	83.67	83.83
TraesCS6B01G386400.1	Wheat	plastid	82.19	81.73
TraesCS6D01G336000.1	Wheat	golgi	82.0	81.55
TraesCS6A01G353700.1	Wheat	plastid	81.63	80.88
HORVU6Hr1G084510.1	Barley	plastid	81.45	77.15
VIT_04s0008g07020.t01	Wine grape	plastid	65.12	64.52
KRH52304	Soybean	plastid	64.01	63.89
AT2G24820.1	Thale cress	plastid	62.71	62.71
Bra000547.1-P	Field mustard	plastid	62.71	62.48
CDY38515	Canola	plastid	62.71	62.48
CDY38513	Canola	plastid	62.71	62.48
CDX83228	Canola	plastid	62.71	62.48
GSMUA_Achr4P20520_001	Banana	plastid	58.63	62.2
Solyc12g096550.1.1	Tomato	plastid	61.78	60.99
KRH61640	Soybean	plasma membrane, plastid	64.75	60.7
PGSC0003DMT400075266	Potato	plastid	61.78	60.66
CDY38514	Canola	plastid	23.19	53.19
Os03t0805900-00	Rice	plastid	14.84	28.57
Os03t0146400-01	Rice	plastid	24.3	24.76
Os03t0805700-00	Rice	mitochondrion	23.75	24.06
Os03t0805600-00	Rice	extracellular, mitochondrion	8.35	21.95
Os03t0806300-00	Rice	peroxisome	20.96	19.69
Os10t0567400-01	Rice	mitochondrion	18.37	18.3
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	17.25	17.16

Protein Annotations

Gene3D:2.102.10.10	MapMan:23.1.3.5.2	EntrezGene:4330982	EMBL:AK105616	EMBL:AK120704	ProteinID:BAD19185.1
ProteinID:BAD19653.1	ProteinID:BAF10277.1	ProteinID:BAS81327.1	ProteinID:EAZ24908.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0010277
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0045036	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	EnsemblPlantsGene:Os02g0792800	EnsemblPlants:Os02t0792800-01	PFAM:PF00355	PFAM:PF08417
PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29	InterPro:PaO	UniProt:Q6K689	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00003757B1
RefSeq:XP_015627610.1	SEG:seg	:	:	:	:

Description

Similar to Rieske iron-sulfur protein Tic55 precursor. (Os02t0792800-01);Similar to Rieske iron-sulfur protein Tic55 precursor. (Os02t0792800-02)

Coordinates

chr2:+:33688668..33690441

Molecular Weight (calculated)

60014.7 Da

IEP (calculated)

9.294

GRAVY (calculated)

-0.327

Length

539 amino acids

Sequence
(BLAST)

001: MTTPRATTTT SPFSSLLLLP ISPSAATPPR RARTPPPAVA HGGVRWTAGG RRRRRGCRAA AAVVEDGVLL PKEQEDDASA ARYDWREEWY PLYLAKEVPD
101: DAALPLTVFD RQLVLYRDAA GVLRCHEDRC PHRLAKLSEG QLVDGKLECL YHGWQFDGEG KCVKIPQLPD GAKIPRNACA RSYEVRDSQG VVWAWMSGTN
201: PPDERKLPWF EPYARPGFTD LSTVHELPYD HSILLENLMD PAHVPISHDR TDWTAKREDA QPLFFEVTER TPRGFAGYWG KQRTPHLRNL LRFEAPCVLT
301: NTLEFVDKDG KEQCFSAHFL CRPAGQGKSM LLVRFGSTQT SPLVKVLPRW YFHQNACKVF EQDMGFLSSQ NEVLLREKVP TKELYLNLRS SDTWVAEYRR
401: WMDRAGHGMP YYFGHSTLSP PPVPAVVEQA PAGAVAGMSA SFPAKGGVGA THAPNPTNRY FRHVVHCKGC RDSVKRYASL KNAFAALAAA AVAAAILAAT
501: RQLKAVLLAS AAALAAASYA CNWVLSLITT NFIRTHRRL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.