CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000547.1-P	Field mustard	plastid	99.82	99.82
CDY38515	Canola	plastid	99.82	99.82
CDY38513	Canola	plastid	99.63	99.63
CDY38514	Canola	plastid	42.7	98.3
AT2G24820.1	Thale cress	plastid	90.39	90.72
KRH52304	Soybean	plastid	70.98	71.11
VIT_04s0008g07020.t01	Wine grape	plastid	69.5	69.12
KRH61640	Soybean	plasma membrane, plastid	70.98	66.78
Solyc12g096550.1.1	Tomato	plastid	67.28	66.67
PGSC0003DMT400075266	Potato	plastid	67.65	66.67
Os02t0792800-01	Rice	plastid	62.48	62.71
TraesCS6B01G386400.1	Wheat	plastid	62.48	62.36
GSMUA_Achr7P16230_001	Banana	plastid	63.96	62.23
TraesCS6D01G336000.1	Wheat	golgi	62.11	61.99
EES05942	Sorghum	plastid	61.55	61.9
TraesCS6A01G353700.1	Wheat	plastid	62.11	61.76
Zm00001d018358_P001	Maize	plastid	61.0	61.34
HORVU6Hr1G084510.1	Barley	plastid	62.11	59.05
CDY29727	Canola	plastid	25.51	25.84
CDX89405	Canola	plastid	24.21	24.53
CDX94430	Canola	plastid	24.21	24.49
CDY20340	Canola	plastid	25.51	24.13
CDY36339	Canola	plastid	16.08	16.6
CDY63862	Canola	plastid	16.27	16.57
CDY14980	Canola	plastid	16.27	16.48

Protein Annotations

Gene3D:2.102.10.10	MapMan:23.1.3.5.2	GO:A0A078D7K5	EnsemblPlants:CDX83228	ProteinID:CDX83228	ProteinID:CDX83228.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277
GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00138775001	InterPro:IPR017941	InterPro:IPR036922
PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29	InterPro:PaO
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI0004EF3046
SEG:seg	:	:	:	:	:

Description

BnaA03g22780D

Coordinates

chrLK031832:-:538813..541208

Molecular Weight (calculated)

61009.3 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.309

Length

541 amino acids

Sequence
(BLAST)

001: MAAPFLSSPL QITSTSPILF TKVTPTNQIQ FNQRTTSTCT SNKLRLLRRS AAAGTAVTDQ TEGGEEVLIN PTSEEEKREE VVDYDWTEEW YPLYLTRDVP
101: DDSPLGLTVF DRQIVLYRDG EGTLRCYEDR CPHRLAKLSE GQLIDGRLEC LYHGWQFEGN GKCVKIPQLP ASAKIPKVAC VKTYEVKDSQ GVVWVWMSTK
201: TPPDPEKLPW FENFARPGFY DISGVHELPY DHSILLENLM DPAHVPISHD RTDFTAKRED AQPLVFEVTE RTNRGFAGTW GREKEGGKGS NLLRFSAPCV
301: LQNNREFEGK DGVKNYFSGL FLCRPTGQGK SMLIVRFGVT KRSPLVQVLP LWFWHQNACK VFEQDMGFLS SQNEVLMKEK VPTKELYLNL KSSDTWVAEY
401: RKWMDKVGHG MPYHFGHRTI SLPKVPPVVE HAPAGLIAGL SASYPAKGGI GTMQAPNLAN RYFRHVIHCR SCSKVIKSFE LWKNILFGTA VALTALAILV
501: VSRQWKAVLL GSATLCSAAA YACLRAIQMN TNNFIRTHRR L

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.