CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
mitochondrion 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52304	Soybean	plastid	87.83	93.52
VIT_04s0008g07020.t01	Wine grape	plastid	71.48	75.55
KRH05339	Soybean	cytosol	17.74	73.91
AT2G24820.1	Thale cress	plastid	67.13	71.61
CDX83228	Canola	plastid	66.78	70.98
CDY38513	Canola	plastid	66.78	70.98
CDY38515	Canola	plastid	66.61	70.79
Bra000547.1-P	Field mustard	plastid	66.61	70.79
PGSC0003DMT400075266	Potato	plastid	66.61	69.76
Solyc12g096550.1.1	Tomato	plastid	65.91	69.41
GSMUA_Achr7P16230_001	Banana	plastid	63.65	65.83
Os02t0792800-01	Rice	plastid	60.7	64.75
EES05942	Sorghum	plastid	59.65	63.75
TraesCS6D01G336000.1	Wheat	golgi	59.3	62.92
TraesCS6B01G386400.1	Wheat	plastid	59.3	62.92
TraesCS6A01G353700.1	Wheat	plastid	59.48	62.87
Zm00001d018358_P001	Maize	plastid	58.61	62.64
HORVU6Hr1G084510.1	Barley	plastid	60.0	60.63
CDY38514	Canola	plastid	24.17	59.15
KRH58922	Soybean	plastid	23.65	25.71
KRH42828	Soybean	plastid	23.3	25.24
KRH30552	Soybean	plastid	23.13	24.4
KRH25120	Soybean	plastid	23.3	23.8
KRH42827	Soybean	mitochondrion	5.39	21.53
KRH18716	Soybean	golgi	14.78	15.98
KRH16353	Soybean	cytosol, golgi, plastid	14.78	15.92
KRH53240	Soybean	plastid	14.43	15.66
KRH64672	Soybean	plastid	14.43	15.66

Protein Annotations

EntrezGene:100808233	Gene3D:2.102.10.10	MapMan:23.1.3.5.2	EMBL:ACUP02002179	EnsemblPlantsGene:GLYMA_04G059800	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	UniProt:I1JU51
InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH61640	ProteinID:KRH61640	ProteinID:KRH61640.1	PFAM:PF00355
PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29	InterPro:PaO	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI000295294E	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:4899268..4901980

Molecular Weight (calculated)

64992.4 Da

IEP (calculated)

8.997

GRAVY (calculated)

-0.238

Length

575 amino acids

Sequence
(BLAST)

001: MEVLLLCGQE RHTKRAFVSF PVFLPRLSLC LCYLLRSSLL LSNMALVNPF LCTTRTSLPL RVSGPPNQVL PRWTLCSQYS FKTSSLRSKQ LRCGATADIK
101: ADHAVLVGPT SEEERKGDYD WTQEWYPLYL TQNVPEDAPL GLRVFDKQLV LFKDGNGQFR CYEDRCPHRL AKLSEGQLID GRLECLYHGW QFEGEGKCVK
201: IPQLPADAKI PRAACVKTYE VRDSQGVIWV WMSLKTPPNV SKLPWFENFA RPGFQDVSTI HELPYDHSIL LENLMDPAHI PISHDRTDWT AKREDAQPLC
301: FEVTERTDRG FAGWWGREKD GSMPNFLRFE APCVLQNNRE IVDKNGEINY FSGLFLCRPT GQGKSMLIVR FGGTKRSPLA KVFPKWYFHQ NASKVFEQDM
401: GFLSSQNEIL LREKVPTKEL YLNLKSSDTW VAEYRKWMDK AGHGMPYHFG HSTISLPKEP AVVEHAPAGL VAGQSASSPT KGGIGTMHAP NFANRYFRHV
501: IHCKGCRTVV KAFEAWKNAL SAVAIALTAL AILLSGRQWK VLLLASAALC SVGVYACSTA IAMNTTNFIR THRRL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.