CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61640	Soybean	plasma membrane, plastid	93.52	87.83
VIT_04s0008g07020.t01	Wine grape	plastid	75.37	74.82
KRH05339	Soybean	cytosol	19.07	74.64
AT2G24820.1	Thale cress	plastid	71.85	71.99
CDX83228	Canola	plastid	71.11	70.98
CDY38513	Canola	plastid	71.11	70.98
CDY38515	Canola	plastid	70.93	70.79
Bra000547.1-P	Field mustard	plastid	70.93	70.79
PGSC0003DMT400075266	Potato	plastid	71.11	69.95
Solyc12g096550.1.1	Tomato	plastid	70.56	69.78
GSMUA_Achr7P16230_001	Banana	plastid	65.93	64.03
Os02t0792800-01	Rice	plastid	63.89	64.01
EES05942	Sorghum	plastid	62.96	63.2
TraesCS6A01G353700.1	Wheat	plastid	62.78	62.32
TraesCS6D01G336000.1	Wheat	golgi	62.41	62.18
TraesCS6B01G386400.1	Wheat	plastid	62.41	62.18
Zm00001d018358_P001	Maize	plastid	61.48	61.71
HORVU6Hr1G084510.1	Barley	plastid	62.41	59.23
CDY38514	Canola	plastid	25.37	58.3
KRH58922	Soybean	plastid	25.19	25.71
KRH42828	Soybean	plastid	24.81	25.24
KRH30552	Soybean	plastid	25.0	24.77
KRH25120	Soybean	plastid	24.81	23.8
KRH42827	Soybean	mitochondrion	5.74	21.53
KRH18716	Soybean	golgi	15.74	15.98
KRH16353	Soybean	cytosol, golgi, plastid	15.74	15.92
KRH53240	Soybean	plastid	15.37	15.66
KRH64672	Soybean	plastid	15.37	15.66

Protein Annotations

EntrezGene:100818625	Gene3D:2.102.10.10	MapMan:23.1.3.5.2	EMBL:ACUP02003417	EnsemblPlantsGene:GLYMA_06G060200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	UniProt:I1K8L2
InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH52304	ProteinID:KRH52304	ProteinID:KRH52304.1	PFAM:PF00355
PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29	InterPro:PaO	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI000233A8A2	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:4569855..4572725

Molecular Weight (calculated)

60585.8 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.265

Length

540 amino acids

Sequence
(BLAST)

001: MALVNPFLSP PRTPLSLRVS APPNQALLRW TLCSQYSFKP SSLRSKHAMC GATADIKAAP LADGEADHAV LVGPASEDER KGDYDWTQEW YPLYLTLNVP
101: EDAPLGLRVF DKQLVLFKDG NGQFRCYEDR CPHRLAKLSE GQLIDGRLEC LYHGWQFEGE GKCVKIPQLP ADAKIPQAAC VKTYEVRDSQ GVIWVWMSLK
201: TPPNVSKLPW FENFARPEFQ DISTIHELPY DHSILLENLM DPAHIPISHD RTDWTAKRED AQPLCFEVTE RTHRGFAGWW GREKDGSMPN FLRFEAPCVL
301: QNNREIVDKN GEINYFSGLF LCRPTGQGKS MLIVRFGGTK RSPLAKVFPK WYLHQNASKV FEQDMGFLSS QNEILLKEKV STKELYLNLK SSDTWVAEYR
401: KWMDKAGHGM PYHFGHSTIS LPKEPAVVEH APAGLVAGQS ASSPTKGGIG TMHAPNFANR YFRHVIHCKG CRTVVKAFEA WKNALSAVAV ALVALAILVS
501: GRQWKALLLA SAALCSVGVY ACSIAIAMNT TNFIRTHRRL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.