Factsheet for Zm00001d018358_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05942	Sorghum	plastid	93.12	93.12
Os02t0792800-01	Rice	plastid	83.83	83.67
TraesCS6D01G336000.1	Wheat	golgi	82.16	81.55
TraesCS6B01G386400.1	Wheat	plastid	82.16	81.55
TraesCS6A01G353700.1	Wheat	plastid	81.78	80.88
HORVU6Hr1G084510.1	Barley	plastid	81.78	77.33
VIT_04s0008g07020.t01	Wine grape	plastid	63.94	63.24
GSMUA_Achr4P20520_001	Banana	plastid	58.55	62.01
KRH52304	Soybean	plastid	61.71	61.48
Bra000547.1-P	Field mustard	plastid	61.34	61.0
CDX83228	Canola	plastid	61.34	61.0
CDY38513	Canola	plastid	61.34	61.0
CDY38515	Canola	plastid	61.34	61.0
AT2G24820.1	Thale cress	plastid	60.97	60.85
PGSC0003DMT400075266	Potato	plastid	60.04	58.83
Solyc12g096550.1.1	Tomato	plastid	59.67	58.79
KRH61640	Soybean	plasma membrane, plastid	62.64	58.61
CDY38514	Canola	plastid	22.68	51.91
Zm00001d002582_P001	Maize	peroxisome	11.15	28.04
Zm00001d027656_P001	Maize	plastid	23.79	24.62
Zm00001d034523_P001	Maize	plastid	23.98	24.57
Zm00001d035045_P001	Maize	plastid	6.32	22.08
Zm00001d004531_P001	Maize	extracellular, plastid	10.22	20.0
Zm00001d011533_P001	Maize	plastid	14.5	19.4
Zm00001d042026_P001	Maize	cytosol	15.61	16.57
Zm00001d011819_P001	Maize	plastid	16.17	16.05

Protein Annotations

EntrezGene:100382079	Gene3D:2.102.10.10	MapMan:23.1.3.5.2	ProteinID:AQK75708.1	EMBL:BT063091	UniProt:C0P472
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	GO:GO:0010277	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0045036
GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417
PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI0001948C47	EnsemblPlantsGene:Zm00001d018358	EnsemblPlants:Zm00001d018358_P001
EnsemblPlants:Zm00001d018358_T001	SEG:seg	:	:	:	:

Description

Protein TIC 55 chloroplastic

Coordinates

chr5:+:219156200..219158425

Molecular Weight (calculated)

59409.9 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.260

Length

538 amino acids

Sequence
(BLAST)

001: MTTPSTAPAP LASLLRVSAA AVPVARRRPK SPAAAAAARW EGGGGRRRCR AAVVEEAGVL LPKEGEGEGE GEEAPDAAAG RYDWREEWYP LYLAKEVPDD
101: AALPLTVFDR QLVLWRDAHG VLRCHEDRCP HRLAKLSEGQ IVDGKLECLY HGWQFDGDGK CVKIPQLPEG AKIPRSACAR NYEVRDSQGV VWVWMSDANP
201: PDEGKLPWFE PYARAGFTDL STVHELPYDH SILLENLMDP AHVPISHDRT DWTAKREDAQ PLFFDVTERT PRGFAGYWGR TGTPHLRNLL RFEAPCVLTN
301: TLEFADKDGR EQCFSAHFLC RPAGQGKSML LVRFGSTLRS PLAKVLPSWY FHQNACKVFE QDMGFLSSQN EVLLREKLPT RELYLNLRSS DTWVAEYRKW
401: MDRAGHGMPY YFGHSTLSPP PVPAVVEQAP AGAVAGISAS FPAKGGVGMV HAPNPTNRYF RHVVHCKGCR ATVKKYTSLK TVFAALAAAA LSAAILAATR
501: QWKAVLVAAS AVLAAASYAC DAVLSLITTN FIRTHRRL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.