CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000547.1-P	Field mustard	plastid	98.72	42.88
CDY38515	Canola	plastid	98.72	42.88
CDX83228	Canola	plastid	98.3	42.7
CDY38513	Canola	plastid	97.45	42.33
AT2G24820.1	Thale cress	plastid	82.98	36.18
VIT_04s0008g07020.t01	Wine grape	plastid	60.85	26.29
KRH52304	Soybean	plastid	58.3	25.37
KRH61640	Soybean	plasma membrane, plastid	59.15	24.17
PGSC0003DMT400075266	Potato	plastid	55.74	23.86
Solyc12g096550.1.1	Tomato	plastid	55.32	23.81
GSMUA_Achr7P16230_001	Banana	plastid	55.32	23.38
TraesCS6B01G386400.1	Wheat	plastid	53.62	23.25
Os02t0792800-01	Rice	plastid	53.19	23.19
TraesCS6A01G353700.1	Wheat	plastid	53.62	23.16
TraesCS6D01G336000.1	Wheat	golgi	53.19	23.06
Zm00001d018358_P001	Maize	plastid	51.91	22.68
EES05942	Sorghum	plastid	51.91	22.68
HORVU6Hr1G084510.1	Barley	plastid	53.19	21.97
CDY29727	Canola	plastid	26.38	11.61
CDX89405	Canola	plastid	25.53	11.24
CDX94430	Canola	plastid	25.53	11.21
CDY20340	Canola	plastid	26.38	10.84
CDY63862	Canola	plastid	21.28	9.42
CDY14980	Canola	plastid	21.28	9.36
CDY36339	Canola	plastid	20.85	9.35

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	GO:A0A078HMF0	UniProt:A0A078HMF0	EnsemblPlants:CDY38514	ProteinID:CDY38514
ProteinID:CDY38514.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00066147001	InterPro:IPR017941	InterPro:IPR036922
PFAM:PF00355	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
SUPFAM:SSF50022	UniParc:UPI0004EEBF12	:	:	:	:

Description

BnaC03g26830DBnaC03g26830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMF0]

Coordinates

chrLK032425:-:74552..75863

Molecular Weight (calculated)

26751.7 Da

IEP (calculated)

5.015

GRAVY (calculated)

-0.509

Length

235 amino acids

Sequence
(BLAST)

001: MAAPFLSSPL QITSTSPILF TKVTPTNQIQ FNQRTTSTCT SNKLRLLRRS AAAGTAVTDQ TEGGEEVLIN PTPEEEKREE VVDYDWTEEW YPLYLTRDVP
101: DDSPLGLTVF DRQIVLYRDG EGTLRCYEDR CPHRLAKLSE GQLIDGRLEC LYHGWQFEGN GKCVKIPQLP ASAKIPKVAC VKTYEVKDSQ GVVWVWMSTK
201: TPPDPEKLPW FENFARPGFY DISGVHELPH RMQLE

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.