Factsheet for Solyc12g096550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075266	Potato	plastid	97.25	96.72
VIT_04s0008g07020.t01	Wine grape	plastid	71.79	72.06
KRH52304	Soybean	plastid	69.78	70.56
AT2G24820.1	Thale cress	plastid	66.85	67.72
CDX83228	Canola	plastid	66.67	67.28
CDY38513	Canola	plastid	66.67	67.28
Bra000547.1-P	Field mustard	plastid	66.48	67.1
CDY38515	Canola	plastid	66.48	67.1
KRH61640	Soybean	plasma membrane, plastid	69.41	65.91
Os02t0792800-01	Rice	plastid	60.99	61.78
TraesCS6B01G386400.1	Wheat	plastid	60.07	60.52
TraesCS6D01G336000.1	Wheat	golgi	59.89	60.33
TraesCS6A01G353700.1	Wheat	plastid	59.89	60.11
EES05942	Sorghum	plastid	58.97	59.85
Zm00001d018358_P001	Maize	plastid	58.79	59.67
GSMUA_Achr7P16230_001	Banana	plastid	60.44	59.35
HORVU6Hr1G084510.1	Barley	plastid	59.71	57.29
CDY38514	Canola	plastid	23.81	55.32
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	7.33	29.85
Solyc04g024920.1.1	Tomato	extracellular	3.48	24.36
Solyc11g066440.1.1	Tomato	plastid	22.34	22.72
Solyc04g040160.2.1	Tomato	plastid	21.79	21.88
Solyc11g012850.1.1	Tomato	plastid	16.67	17.01
Solyc06g060310.2.1	Tomato	golgi	16.48	16.82

Protein Annotations

Gene3D:2.102.10.10	MapMan:23.1.3.5.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0010277	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0045036	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922
UniProt:K4DHC8	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	EnsemblPlantsGene:Solyc12g096550.1
EnsemblPlants:Solyc12g096550.1.1	TMHMM:TMhelix	UniParc:UPI0002769D44	SEG:seg	:	:

Description

Protein TIC 55, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G24820) UniProtKB/Swiss-Prot;Acc:Q9SK50]

Coordinates

chr12:-:65418955..65421776

Molecular Weight (calculated)

62245.5 Da

IEP (calculated)

8.723

GRAVY (calculated)

-0.372

Length

546 amino acids

Sequence
(BLAST)

001: MALQQPFLSE LLLHSSSIRT TLPKSSLFSL QIPQRFNLYL QNKQIKKQGT SCYAIAENLE AEDQSLILEN SSLDELRGQR EIVGYDWTEE WYPLYLTKNV
101: PNDAPLGLTV FDKQVVLYKD GSGELRCFED RCPHRLAKLS EGQLYDGKLE CLYHGWQFDG DGKCVKIPQL PENAKIPRSA CTKTYEIRDS QGVVWIWMSH
201: GTPPNINKIP WFENFERKGF RDISTIHELP YDHSILLENL MDPAHVPISH DRTDFTAKRE DAGPLFFEVT ERTNRGFAGW WGKERDQGKA NYTPNFLRFE
301: SPCVLQNNRE IVDESGEKHY FSGLFLCRPS GQGKSMLIVR FGNTRKRTGI LKFIPNWFLH QNASKVFEQD MGFLSSQNEI LMKEKVPTKK LYLNLKSSDT
401: WVAEYRKWMD KVGHGMPYHF GHSTIFLPQQ PAVVEHAPAG FVANFSAAQP AKGGIGGIYA PNPANRYFRH VVHCRDCSNV VKAFETWKKA LSVIALVSTA
501: FAILVSGRQW KALLLLSTSL CLAGAYACST AIAMNTTNFI RTHRRL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.