Factsheet for Solyc06g060310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045302	Potato	plastid	97.76	97.76
Solyc11g012850.1.1	Tomato	plastid	85.79	85.79
VIT_18s0001g02700.t01	Wine grape	cytosol	78.88	81.47
KRH53240	Soybean	plastid	80.19	80.94
KRH64672	Soybean	plastid	80.19	80.94
KRH16353	Soybean	cytosol, golgi, plastid	80.56	80.71
KRH18716	Soybean	golgi	80.19	80.64
CDY36339	Canola	plastid	74.39	75.95
Bra036948.1-P	Field mustard	plastid	75.51	75.66
CDY14980	Canola	plastid	75.51	75.66
AT1G44446.1	Thale cress	plastid	75.7	75.56
CDY63862	Canola	plastid	74.95	75.52
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	75.14	74.44
GSMUA_Achr6P25590_001	Banana	plastid	75.51	73.59
Zm00001d042026_P001	Maize	cytosol	68.78	72.58
EES04263	Sorghum	cytosol	73.27	72.32
Os10t0567400-01	Rice	mitochondrion	73.08	72.27
Zm00001d011819_P001	Maize	plastid	72.34	71.4
HORVU0Hr1G007360.2	Barley	mitochondrion	69.53	67.64
TraesCS3A01G506200.1	Wheat	mitochondrion	69.35	67.45
TraesCS3D01G514100.1	Wheat	mitochondrion	69.35	67.45
TraesCS3B01G574300.1	Wheat	mitochondrion	68.97	67.09
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	67.1	66.24
Zm00001d004531_P001	Maize	extracellular, plastid	23.55	45.82
Solyc04g024920.1.1	Tomato	extracellular	5.79	39.74
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	5.61	22.39
Solyc12g096550.1.1	Tomato	plastid	16.82	16.48
Solyc11g066440.1.1	Tomato	plastid	14.21	14.15
Solyc04g040160.2.1	Tomato	plastid	14.21	13.97

Protein Annotations

Gene3D:2.102.10.10	MapMan:7.12.6.6.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0016705
GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	UniProt:K4C6L2	PFAM:PF00355
PFAM:PF08417	ScanProsite:PS00570	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19	InterPro:PaO
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Ring-hydroxy_dOase_2Fe2S_BS	SUPFAM:SSF50022	SUPFAM:SSF55961	EnsemblPlantsGene:Solyc06g060310.2
EnsemblPlants:Solyc06g060310.2.1	UniParc:UPI0002766154	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:38283795..38287572

Molecular Weight (calculated)

60582.8 Da

IEP (calculated)

8.129

GRAVY (calculated)

-0.304

Length

535 amino acids

Sequence
(BLAST)

001: MSAIATSAAL FFPFSFCRST KTYTRKCFKG GFGVFAVYEE AAGTELSNKK SSWLTIFDVE DPRSKFPQSK GKFLDANQAL EVARFDIQYC DWRARQDVLT
101: IMLLHEKVVE VLNPLAREYK SIGTVKKELA DLQEALSQAH KEVHISEVRV SAALDKLAYM EALVNDRLLP ERTTEESDSP SSSPGTSTVS RDNVKSKQPR
201: RSLNVSGPVQ EYSPHLKNFW YPVAFSADIK DNTMIPIECF EEPWVIFRGK DGKPGCVRNT CAHRACPLHL GSVKEGRIQC PYHGWEYSTD GKCEKMPSTK
301: FLNVKIKSLP CFEQEGMIWI WPGNDPPTAT LPSLLPPSGF QIHAEIVMEL PVEHGLLLDN LLDLAHAPFT HTSTFAKGWS VPSFVNFLTP ASGLQGYWDP
401: YPIDMEFRPP CMVLSTIGIS KPGKLEGQST RECSTHLHQL HVCLPASRQK TRLLYRMSLD FAPILKHMPF MQYVWRHFAE QVLNEDLRLV IGQQDRMLKG
501: ANIWNLPVSY DKLGVRYRIW RDAVESGAKQ LPFSK

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.