Factsheet for GSMUA_Achr6P25590_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02700.t01	Wine grape	cytosol	75.59	80.12
KRH64672	Soybean	plastid	75.59	78.3
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	75.96	77.22
Os10t0567400-01	Rice	mitochondrion	75.96	77.08
Solyc11g012850.1.1	Tomato	plastid	74.86	76.82
KRH53240	Soybean	plastid	74.13	76.79
KRH18716	Soybean	golgi	74.32	76.69
PGSC0003DMT400002345	Potato	plastid	74.68	76.64
KRH16353	Soybean	cytosol, golgi, plastid	73.77	75.84
PGSC0003DMT400045302	Potato	plastid	73.77	75.7
Solyc06g060310.2.1	Tomato	golgi	73.59	75.51
EES04263	Sorghum	cytosol	74.13	75.09
Zm00001d011819_P001	Maize	plastid	73.22	74.17
Zm00001d042026_P001	Maize	cytosol	67.94	73.57
CDY36339	Canola	plastid	69.22	72.52
CDY63862	Canola	plastid	69.95	72.32
CDY14980	Canola	plastid	70.13	72.1
Bra036948.1-P	Field mustard	plastid	70.13	72.1
AT1G44446.1	Thale cress	plastid	69.58	71.27
HORVU0Hr1G007360.2	Barley	mitochondrion	70.49	70.36
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	69.4	70.3
TraesCS3A01G506200.1	Wheat	mitochondrion	70.31	70.18
TraesCS3D01G514100.1	Wheat	mitochondrion	70.31	70.18
TraesCS3B01G574300.1	Wheat	mitochondrion	69.95	69.82
Zm00001d004531_P001	Maize	extracellular, plastid	21.68	43.27
GSMUA_Achr4P20520_001	Banana	plastid	16.58	17.91
GSMUA_Achr7P16230_001	Banana	plastid	15.48	15.29
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	11.84	14.87
GSMUA_Achr4P25150_001	Banana	nucleus	14.21	14.1

Protein Annotations

Gene3D:2.102.10.10	MapMan:7.12.6.6.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0016705
GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G25590_001	EnsemblPlants:GSMUA_Achr6P25590_001	EnsemblPlants:GSMUA_Achr6T25590_001	InterPro:IPR017941
InterPro:IPR036922	UniProt:M0TA55	PFAM:PF00355	PFAM:PF08417	ScanProsite:PS00570	PFscan:PS51296
PANTHER:PTHR21266	PANTHER:PTHR21266:SF19	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Ring-hydroxy_dOase_2Fe2S_BS
SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI000296D83C	SEG:seg	:	:

Description

Chlorophyllide a oxygenase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G25590_001]

Coordinates

chr6:+:26663496..26669041

Molecular Weight (calculated)

62196.2 Da

IEP (calculated)

7.992

GRAVY (calculated)

-0.227

Length

549 amino acids

Sequence
(BLAST)

001: MTMVAALSPL PISHFRPSSR FCTQKNVGGR GGFRVLAVFG DGDGGGTDKK NTWGEIFDVE VPRPRVQPSK GKFLDVNQAL EVARMDIQYC DWRARQDVLS
101: IMLLHEKVVE VLNPLARDFK SIGTMKKELA ELQEDLEQAH RQVHVSEARV AAALDKLAYM ESLVSDRLLQ EKSSCDSSIE CITLTPSTSS ASKDPVKSKS
201: SRRSLNVSGP VQPYHSSLKN FWYPVAFSKD LKDDTMIPID CFEEPWVIFR GKDGNPGCVR NTCAHRACPL HLGSVNEGRI QCPYHGWEYS TDGKCEKMPS
301: TRMLNVRIRS LPCFEHEGMI WIWPGSAPPT DTLPSLQPPT GFIIHAEIVM ELPVEHGLLL DNLLDLAHAP FTHTTTFAKG WNVPSLVKFL TPASGLQGYW
401: DPYPIDMEFR PPCIVLSTIG ISKPGKLEGR STRQCSTHLH QLHVCLPSSR QKTRLLYRMS LDFAPLLKHI PFMHILWRHF AEKVLNEDLR LVVGQQDRMI
501: NGANVWNSPV SYDKLGIRYR LWRDSLERGS QFCFCCCIIF FPLFFFELY

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.