Factsheet for PGSC0003DMT400045302

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060310.2.1	Tomato	golgi	97.76	97.76
PGSC0003DMT400002345	Potato	plastid	86.92	86.92
KRH64672	Soybean	plastid	80.75	81.51
VIT_18s0001g02700.t01	Wine grape	cytosol	78.69	81.27
KRH16353	Soybean	cytosol, golgi, plastid	80.93	81.09
KRH18716	Soybean	golgi	80.37	80.83
KRH53240	Soybean	plastid	80.0	80.75
CDY36339	Canola	plastid	74.02	75.57
CDY63862	Canola	plastid	74.77	75.33
Bra036948.1-P	Field mustard	plastid	74.95	75.09
CDY14980	Canola	plastid	74.95	75.09
AT1G44446.1	Thale cress	plastid	75.14	75.0
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	74.77	74.07
GSMUA_Achr6P25590_001	Banana	plastid	75.7	73.77
Os10t0567400-01	Rice	mitochondrion	73.83	73.01
EES04263	Sorghum	cytosol	73.64	72.69
Zm00001d042026_P001	Maize	cytosol	68.6	72.39
Zm00001d011819_P001	Maize	plastid	72.9	71.96
HORVU0Hr1G007360.2	Barley	mitochondrion	69.91	68.0
TraesCS3A01G506200.1	Wheat	mitochondrion	69.72	67.82
TraesCS3D01G514100.1	Wheat	mitochondrion	69.72	67.82
TraesCS3B01G574300.1	Wheat	mitochondrion	69.35	67.45
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	67.29	66.42
Zm00001d004531_P001	Maize	extracellular, plastid	23.36	45.45
PGSC0003DMT400075266	Potato	plastid	16.82	16.39
PGSC0003DMT400027602	Potato	plastid	14.39	14.18
PGSC0003DMT400001216	Potato	plastid	14.39	14.03
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	5.61	12.99

Protein Annotations

EntrezGene:102592765	Gene3D:2.102.10.10	MapMan:7.12.6.6.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491
GO:GO:0016705	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	UniProt:M1BHF4
PFAM:PF00355	PFAM:PF08417	EnsemblPlantsGene:PGSC0003DMG400017570	PGSC:PGSC0003DMG400017570	EnsemblPlants:PGSC0003DMT400045302	ScanProsite:PS00570
PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Ring-hydroxy_dOase_2Fe2S_BS	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI0002968F2A	RefSeq:XP_006363892.1	SEG:seg

Description

Chlorophyll synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400017570]

Coordinates

chr6:-:43209528..43214827

Molecular Weight (calculated)

60592.9 Da

IEP (calculated)

8.129

GRAVY (calculated)

-0.285

Length

535 amino acids

Sequence
(BLAST)

001: MSAIATSAAL SFPFSFCRST KTYTRKCFKG GFGVFAVYEE AAGIELTNKK NSWLTIFDVE DPRSKFPQSK GKFLDANQAL EVARFDIQYC DWRARQDVLT
101: IMLLHEKVVE VLNPLAREYK SIGTVKKELA DLQEALSQAH KEVHISEVRV SAALDKLAYM EALVNDRLLP ERSTEESVST SSSPGTSTVS RDNVKSKQPR
201: RTLNVSGPVQ EYSPHLKNFW YPVAFSADIK DDTMIPIECF EEPWVIFRGK DGKPGCVRNT CAHRACPLHL GSVKEGRIQC PYHGWEYSTD GKCEKMPSTK
301: FLNVKIKSLP CFEQEGMIWI WPGNDPPTAT LPSLLPPSGF QIHAEIVMEL PVEHGLLLDN LLDLAHAPFT HTSTFARGWS VPSFVNFLTP ASGLQGYWDP
401: YPIDMEFRPP CMVLSTIGIS KPGKLEGQST KECSTHLHQL HVCLPASRQK TRLLYRMSLD FAPILKHMPF MQYVWRHFAE QVLNEDLRLV IGQQDRMLKG
501: ANIWNLPVSY DKLGVRYRIW RDAVESGVKQ LPFSK

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.