Factsheet for PGSC0003DMT400007678

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 3
peroxisome 1
plastid 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	67.53	33.69
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	59.74	31.58
PGSC0003DMT400027602	Potato	plastid	74.03	31.49
CDX94430	Canola	plastid	64.5	27.85
Bra013907.1-P	Field mustard	plastid	63.64	27.53
CDX89405	Canola	plastid	63.64	27.53
VIT_06s0004g00630.t01	Wine grape	cytosol	12.99	27.03
AT4G25650.2	Thale cress	plastid	64.07	26.48
Os03t0805900-00	Rice	plastid	31.17	25.71
Zm00001d002582_P001	Maize	peroxisome	22.51	24.3
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	52.81	23.83
EER93253	Sorghum	plastid	53.68	23.62
Os03t0805700-00	Rice	mitochondrion	53.68	23.31
Zm00001d034523_P001	Maize	plastid	52.81	23.24
TraesCS7B01G038300.1	Wheat	golgi	51.95	22.99
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	52.81	22.89
TraesCS7D01G137200.1	Wheat	golgi	51.52	22.8
TraesCS5B01G465000.1	Wheat	golgi	52.38	22.79
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	51.52	22.41
TraesCS5A01G455800.1	Wheat	plastid	52.38	22.16
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	53.25	22.08
KXG37317	Sorghum	plastid	50.22	22.01
TraesCS7B01G038100.1	Wheat	mitochondrion	45.02	21.18
HORVU5Hr1G109470.1	Barley	plastid	51.95	21.16
TraesCS7A01G137000.1	Wheat	plastid	51.95	21.02
Os03t0805600-00	Rice	extracellular, mitochondrion	18.18	20.49
Os03t0806300-00	Rice	peroxisome	48.05	19.34
TraesCS5B01G464800.1	Wheat	cytosol	22.51	17.93
VIT_06s0004g00660.t01	Wine grape	cytosol	5.63	16.46
EER90694	Sorghum	cytosol	19.91	15.65
PGSC0003DMT400001216	Potato	plastid	33.77	14.21
PGSC0003DMT400075266	Potato	plastid	24.68	10.38
Zm00001d035045_P001	Maize	plastid	6.49	9.74
Zm00001d011533_P001	Maize	plastid	16.45	9.45
PGSC0003DMT400045302	Potato	plastid	12.99	5.61
PGSC0003DMT400002345	Potato	plastid	12.99	5.61

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0051537
GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	UniProt:M0ZTD5	PFAM:PF00355	EnsemblPlantsGene:PGSC0003DMG400002967
PGSC:PGSC0003DMG400002967	EnsemblPlants:PGSC0003DMT400007678	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	TMHMM:TMhelix	UniParc:UPI0002960FEC	SEG:seg	:

Description

Pheophorbide A oxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400002967]

Coordinates

chr4:-:25178861..25182625

Molecular Weight (calculated)

26383.7 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.110

Length

231 amino acids

Sequence
(BLAST)

001: MDDACSHRLA PLSQGRIDQW GRLQCVYHGW CFSGSGDCKF IPQAPRDKLH VHTSKRACVA VYPSFVQNDI LWFWPNTDPL YKDIHLSKTP PYIPPLDDLT
101: SYAKTTLVRD IPYGRWLTKY GGAQVDWGTK FTGDLQPTPA REQLLDRYWT HTINCSSCSR AYKSLNVLEI IMQIISVASI GIAAAAKESV MSIAARYSLV
201: FLALLCFMAS RWLSKFIYKS FHFHDYDHAF C

Best Arabidopsis Sequence Match ( AT4G25650.2 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKGKYIICI SNSCFNPFTN LQILLAEKID REGGKPLEIN
301: VKKLDNKGFF SKQEWGYSNF IAPCVYRSST DPLPEQEHEY PAPAASDKAA LSKRRLSLIF ICIPVSPGRS RLIWTFPRNF GVFIDKIVPR WVFHIGQNTI
401: LDSDLHLLHV EERKILERGP ENWQKACFIP TKSDANVVTF RRWFNKYSEA RVDWRGKFDP FLLPPTPPRE QLFDRYWSHV ENCSSCKKAH KYLNALEVIL
501: QIASVAMIGV MAVLKQTTMS NVARIAVLVA AVLSFAASKW LSHFIYKTFH YHDYNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.