Factsheet for TraesCS5A01G455800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	88.64	94.53
TraesCS5B01G464800.1	Wheat	cytosol	49.82	93.79
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	88.83	91.34
Zm00001d034523_P001	Maize	plastid	69.96	72.76
Zm00001d002582_P001	Maize	peroxisome	28.02	71.5
EER93253	Sorghum	plastid	67.77	70.48
Os03t0805700-00	Rice	mitochondrion	65.75	67.48
Os03t0805600-00	Rice	extracellular, mitochondrion	25.09	66.83
KXG37317	Sorghum	plastid	61.9	64.14
TraesCS7A01G137000.1	Wheat	plastid	65.75	62.87
Os03t0805900-00	Rice	plastid	31.5	61.43
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	13.74	55.97
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	42.12	52.63
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	22.16	52.38
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	43.96	51.84
Os03t0806300-00	Rice	peroxisome	54.03	51.39
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	46.89	48.95
KRH58922	Soybean	plastid	47.25	48.77
KRH42828	Soybean	plastid	45.97	47.27
Bra013907.1-P	Field mustard	plastid	46.15	47.19
CDX89405	Canola	plastid	46.15	47.19
CDX94430	Canola	plastid	45.79	46.73
KRH42827	Soybean	mitochondrion	12.27	46.53
AT4G25650.2	Thale cress	plastid	45.97	44.9
PGSC0003DMT400027602	Potato	plastid	43.96	44.2
Solyc04g040160.2.1	Tomato	plastid	43.22	43.38
VIT_06s0004g00660.t01	Wine grape	cytosol	6.23	43.04
Zm00001d035045_P001	Maize	plastid	12.09	42.86
VIT_06s0004g00630.t01	Wine grape	cytosol	7.88	38.74
Zm00001d011533_P001	Maize	plastid	25.82	35.07
TraesCS4A01G411000.1	Wheat	plastid	30.59	31.27
TraesCS6A01G353700.1	Wheat	plastid	24.18	24.26
KRH05339	Soybean	cytosol	6.04	23.91
TraesCS3A01G506200.1	Wheat	mitochondrion	13.92	13.82

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS5A01G455800	EnsemblPlants:TraesCS5A01G455800.1	TIGR:cd03480	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:-:636305586..636308174

Molecular Weight (calculated)

61163.4 Da

IEP (calculated)

8.349

GRAVY (calculated)

-0.217

Length

546 amino acids

Sequence
(BLAST)

001: MNSLSNLLAP RARPSLPLPL PLRAAAPATS SARAAAPAPR RWRQRARLPS PVSAVAAEAP SAASLIDGEE KEKEEGQFDW LDQWYPLAPV CDLDPGAPHG
101: KTVLGLRVVA WYDRAVDEWR VFDDACPHRL APLSEGRIDD KGRLQCVYHG WCFDGRGACQ FIPQAPALGP PVHKNSKACV ASYPSVVQNN ILWFYPRADE
201: EHRDVLQRKR PPFIPEIDDP SFVTVYGVRD LPYGYDVLVE NLMDPAHVPY AHKGLMGKFC KKEDLGRVEF DIEGGGPIKM KTKEANVDGF LTEQQENRGY
301: FRYVAPCTFY GSPLPREVAP FAVDDSPLPS EATEEEKKKK PQFMMVFMCI PVAPGKSRVI WALPRNVGVW LDKVIPRWYY HMGPNALFDS DMYLLHVEER
401: NFAAAGVENW HKAVYVPTSS DNMVIAFRNW FRKHCKSQVG WAVPTADQLP VTPTKDKLME RYWSHVAQCR SCSAALKAMK ALEVALQFAS VAVVGFLAVA
501: KGTLVTSVVQ RAAVVSLAVL CFGASRWLAS FIQKNFYFHD YIHAYK

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.