CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93253	Sorghum	plastid	63.95	64.19
TraesCS7D01G137200.1	Wheat	golgi	62.62	63.22
TraesCS7B01G038300.1	Wheat	golgi	62.62	63.22
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	63.57	63.09
TraesCS5B01G465000.1	Wheat	golgi	63.19	62.71
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	63.38	62.66
TraesCS5A01G455800.1	Wheat	plastid	64.14	61.9
TraesCS5B01G464800.1	Wheat	cytosol	33.97	61.72
Os03t0805700-00	Rice	mitochondrion	61.67	61.09
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	59.2	60.94
TraesCS7B01G038100.1	Wheat	mitochondrion	56.74	60.9
Os03t0805600-00	Rice	extracellular, mitochondrion	23.53	60.49
HORVU5Hr1G109470.1	Barley	plastid	63.38	58.91
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	61.29	57.99
TraesCS7A01G137000.1	Wheat	plastid	62.24	57.44
Os03t0805900-00	Rice	plastid	30.17	56.79
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	14.23	55.97
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	22.01	50.22
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	39.28	47.37
EER90694	Sorghum	cytosol	26.19	46.94
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	40.61	46.22
Os03t0806300-00	Rice	peroxisome	49.53	45.47
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	44.21	44.55
KRH58922	Soybean	plastid	44.21	44.05
KRH42828	Soybean	plastid	44.02	43.69
VIT_06s0004g00660.t01	Wine grape	cytosol	6.45	43.04
CDX89405	Canola	plastid	42.88	42.32
Bra013907.1-P	Field mustard	plastid	42.88	42.32
CDX94430	Canola	plastid	42.88	42.24
KRH42827	Soybean	mitochondrion	11.39	41.67
PGSC0003DMT400027602	Potato	plastid	42.69	41.44
Solyc04g040160.2.1	Tomato	plastid	42.31	40.99
AT4G25650.2	Thale cress	plastid	42.31	39.89
VIT_06s0004g00630.t01	Wine grape	cytosol	7.59	36.04
EER95507	Sorghum	plastid	28.27	28.44
KRH05339	Soybean	cytosol	5.69	21.74
EES05942	Sorghum	plastid	21.63	21.19
EES04263	Sorghum	cytosol	14.61	14.21

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	UniProt:A0A1B6QHD6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KXG37317	ProteinID:KXG37317	ProteinID:KXG37317.2	PFAM:PF00355
PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	EnsemblPlantsGene:SORBI_3001G048600	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI000B8B973E	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:3550596..3552818

Molecular Weight (calculated)

58980.6 Da

IEP (calculated)

8.387

GRAVY (calculated)

-0.157

Length

527 amino acids

Sequence
(BLAST)

001: MELLSLHFLH PRTGRPSLPL AAAAPSNTRR PQSRTYLLAP PRRTRGAPRL SVSAVAAEKP RAEEAPPSPS KTEAFDWLDQ WYPIAPVCDL DPRAPHGKVV
101: LGLSVVAWYD RGAGEWRVFE DACPHRLAPL SQGRIDGKGR LQCAYHGWCF DGAGACAFIP QAPALGPPVH ENRRACVASY PCVVQNNILW FYPRTEAEHR
201: DVLRRKRPPY FAEIDDPSYF TTFGMRDVSV GYDVAVDNIF DIAHVPYAHK GLLPYFRDEE DPGRYHDQEC GEPIKMEIEH ADVHGFLSKM KGGSIRFVAP
301: CTFHGTPAST KVAAGGEAAV WFMLVALIIP VAPGRSRVIW AFPRNAGVWL HKLIPRWFFH SVTNRVIDSD VCLMHVEERK FAAAGLENWH RSCYVPTSSD
401: GMVVAFRDWF RKHCNHQVGW GAPQPDHQLP PSSTKDHLLE RYWSHVAQCT SCSAALRSMR LLEVALQVMS VSVIGSLAVA KGSSLLTSVV QRAVVVTAAV
501: LCFMASRWLA TYIEKNFYFQ DFIHSYN

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.