Factsheet for TraesCS5B01G464800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G455800.1	Wheat	plastid	93.79	49.82
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	87.93	49.8
KRH42827	Soybean	mitochondrion	23.1	46.53
TraesCS5B01G465000.1	Wheat	golgi	85.17	46.52
VIT_06s0004g00660.t01	Wine grape	cytosol	12.07	44.3
TraesCS7B01G038100.1	Wheat	mitochondrion	68.28	40.33
VIT_06s0004g00630.t01	Wine grape	cytosol	15.17	39.64
TraesCS7B01G038300.1	Wheat	golgi	69.66	38.7
Zm00001d034523_P001	Maize	plastid	68.97	38.1
Os03t0805700-00	Rice	mitochondrion	67.59	36.84
EER93253	Sorghum	plastid	66.21	36.57
KXG37317	Sorghum	plastid	61.72	33.97
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	49.31	32.72
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	46.55	29.16
Os03t0806300-00	Rice	peroxisome	56.9	28.75
Os03t0805600-00	Rice	extracellular, mitochondrion	18.97	26.83
KRH58922	Soybean	plastid	48.28	26.46
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	47.59	26.39
Bra013907.1-P	Field mustard	plastid	47.59	25.84
CDX89405	Canola	plastid	47.59	25.84
CDX94430	Canola	plastid	47.24	25.61
KRH42828	Soybean	plastid	46.55	25.42
AT4G25650.2	Thale cress	plastid	47.24	24.51
PGSC0003DMT400027602	Potato	plastid	44.48	23.76
KRH05339	Soybean	cytosol	11.03	23.19
Solyc04g040160.2.1	Tomato	plastid	43.45	23.16
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	17.93	22.51
TraesCS4B01G311100.1	Wheat	golgi	26.21	14.53
TraesCS6B01G386400.1	Wheat	plastid	21.03	11.25
Zm00001d002582_P001	Maize	peroxisome	7.93	10.75
Zm00001d011533_P001	Maize	plastid	12.76	9.2
Os03t0805900-00	Rice	plastid	6.9	7.14
TraesCS3B01G574300.1	Wheat	mitochondrion	10.34	5.45
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	2.07	4.48
Zm00001d035045_P001	Maize	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS5B01G464800.1	EnsemblPlantsGene:TraesCS5B01G464800	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0010277	GO:GO:0055114	InterPro:PaO	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	PFAM:PF08417
SEG:seg	SUPFAM:SSF55961	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5B:-:639620086..639621359

Molecular Weight (calculated)

32736.9 Da

IEP (calculated)

9.989

GRAVY (calculated)

-0.024

Length

290 amino acids

Sequence
(BLAST)

001: MDPAHVPYAH KGLMGKLLKK ENLGRFEFDI EGGGPIKMKT KVANVDGFLT EQQENRGYFR YAAPCTFYGS PLPREVARFA VKKKPQFMMV FMCVPVAPGK
101: SRVIWAFPRN VGLWLDKVIP RWYYHMGPNA LLDSDTYLLH VEERNFAAAG AENWHKAVYV PTSSDNMVIA FRNWFRKHCK SQVGWAVPTA DQLPATPTKD
201: KLMERYWSHV AQCRSCSAAL KAMKALEVAL QFASVAVVGF LAVAKGTLVT SVVQRAVVVS LAVLCFAASR WLASFIEKNF YFHDYVHAYK

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.