CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89405	Canola	plastid	98.13	98.31
AT4G25650.2	Thale cress	plastid	84.49	80.86
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	27.85	64.5
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	16.07	64.18
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	62.24	63.67
KRH42828	Soybean	plastid	62.24	62.71
KRH58922	Soybean	plastid	61.12	61.81
KRH42827	Soybean	mitochondrion	16.64	61.81
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	53.27	61.56
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	46.73	57.21
PGSC0003DMT400027602	Potato	plastid	57.01	56.17
Solyc04g040160.2.1	Tomato	plastid	56.64	55.7
VIT_06s0004g00630.t01	Wine grape	cytosol	10.47	50.45
Zm00001d002582_P001	Maize	peroxisome	19.81	49.53
EER93253	Sorghum	plastid	47.85	48.76
TraesCS7B01G038300.1	Wheat	golgi	46.73	47.89
Zm00001d034523_P001	Maize	plastid	46.92	47.81
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	47.48	47.65
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	47.29	47.65
TraesCS7D01G137200.1	Wheat	golgi	46.17	47.32
TraesCS5B01G465000.1	Wheat	golgi	46.92	47.27
TraesCS5B01G464800.1	Wheat	cytosol	25.61	47.24
VIT_06s0004g00660.t01	Wine grape	cytosol	6.92	46.84
Os03t0805700-00	Rice	mitochondrion	45.79	46.05
TraesCS5A01G455800.1	Wheat	plastid	46.73	45.79
TraesCS7B01G038100.1	Wheat	mitochondrion	41.5	45.21
HORVU5Hr1G109470.1	Barley	plastid	47.66	44.97
Os03t0805900-00	Rice	plastid	23.36	44.64
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	46.36	44.52
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	42.43	44.34
TraesCS7A01G137000.1	Wheat	plastid	45.79	42.91
KXG37317	Sorghum	plastid	42.24	42.88
Os03t0805600-00	Rice	extracellular, mitochondrion	14.39	37.56
EER90694	Sorghum	cytosol	20.37	37.07
Os03t0806300-00	Rice	peroxisome	39.44	36.76
Zm00001d035045_P001	Maize	plastid	8.6	29.87
CDY29727	Canola	plastid	28.22	28.28
KRH05339	Soybean	cytosol	7.1	27.54
CDY20340	Canola	plastid	28.6	26.75
Zm00001d011533_P001	Maize	plastid	19.63	26.12
CDY38514	Canola	plastid	11.21	25.53
CDY38515	Canola	plastid	24.67	24.4
CDY38513	Canola	plastid	24.49	24.21
CDX83228	Canola	plastid	24.49	24.21
CDY36339	Canola	plastid	14.77	15.08
CDY63862	Canola	plastid	14.95	15.07
CDY14980	Canola	plastid	14.95	14.98

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	GO:A0A078DYK3	EnsemblPlants:CDX94430	ProteinID:CDX94430	ProteinID:CDX94430.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277
GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00157574001	InterPro:IPR017941	InterPro:IPR036922
PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI0004EC50EC
SEG:seg	:	:	:	:	:

Description

BnaC01g17540D

Coordinates

chrLK031881:+:1115549..1117879

Molecular Weight (calculated)

60889.2 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.369

Length

535 amino acids

Sequence
(BLAST)

001: MEAALATCTL PSPRILKPKP RFRCSLPNPK PISPNSIAFK SPPPPSKSNL FTTAVSSSPT VAPTNSPPEP EPGSDSSSKK FDWYANWYPV MPICDLDKKA
101: PHGKRVMGID VVVWWDRNES QWKVMDDTCP HRLAPLSDGR IDQWGRLQCV YHGWCFNGKG DCKLIPQAPP DGPPVHTFKQ ACVAVYPSTV QHEILWFWPN
201: SDPKYKNVLE TNKPPYIPEL EDPSFTKLVA NRDIPYGYDV LVENLMDPAH VPYAHYGLMR VGKPKEKVDR EGGKPLEITV KRLDNEGFFA RQEWGYANFI
301: APCVYRASTE PLREEDKDSI TSEKGPLKNR KLSLIFICIP VSPGRSRLIW TFPRNFGVAI DKIVPRWVFH IGQNKILDSD LHLLHVEERK ILERGPENWQ
401: KACFIPTKSD ALVVTFRRWF NKYSGAQVDW RGKFDPSLLP PTPPREQLFD RYWSHVENCS SCKKAHKYLN AFEVILQIVS VALIGVMAVT KQIAMSNVAR
501: SVVVVAAVLS FAASKWLSHF IYKTFHYHDY NHALV

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.