Factsheet for GSMUA_Achr2P12380_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 2
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	31.58	59.74
VIT_06s0004g00630.t01	Wine grape	cytosol	14.87	58.56
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	60.41	57.02
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	66.82	55.83
VIT_06s0004g00660.t01	Wine grape	cytosol	10.07	55.7
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	16.02	52.24
KRH42827	Soybean	mitochondrion	16.93	51.39
KRH42828	Soybean	plastid	61.78	50.85
KRH58922	Soybean	plastid	60.41	49.91
TraesCS5B01G464800.1	Wheat	cytosol	32.72	49.31
Solyc04g040160.2.1	Tomato	plastid	60.18	48.35
PGSC0003DMT400027602	Potato	plastid	59.04	47.51
CDX94430	Canola	plastid	57.21	46.73
EER93253	Sorghum	plastid	56.06	46.67
Bra013907.1-P	Field mustard	plastid	56.98	46.63
CDX89405	Canola	plastid	56.98	46.63
Zm00001d034523_P001	Maize	plastid	55.84	46.48
AT4G25650.2	Thale cress	plastid	57.89	45.26
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	54.46	44.65
TraesCS5B01G465000.1	Wheat	golgi	54.0	44.44
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	53.55	44.07
TraesCS7B01G038300.1	Wheat	golgi	51.95	43.49
TraesCS7D01G137200.1	Wheat	golgi	50.57	42.34
TraesCS5A01G455800.1	Wheat	plastid	52.63	42.12
HORVU5Hr1G109470.1	Barley	plastid	53.78	41.45
TraesCS7B01G038100.1	Wheat	mitochondrion	46.45	41.34
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	48.28	41.21
Os03t0805700-00	Rice	mitochondrion	49.89	40.98
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	51.26	40.22
EER90694	Sorghum	cytosol	26.77	39.8
Zm00001d002582_P001	Maize	peroxisome	19.45	39.72
KXG37317	Sorghum	plastid	47.37	39.28
TraesCS7A01G137000.1	Wheat	plastid	49.89	38.18
Os03t0805900-00	Rice	plastid	24.26	37.86
Os03t0806300-00	Rice	peroxisome	47.37	36.06
GSMUA_Achr4P25150_001	Banana	nucleus	33.64	26.58
Os03t0805600-00	Rice	extracellular, mitochondrion	11.9	25.37
KRH05339	Soybean	cytosol	7.78	24.64
GSMUA_Achr7P16230_001	Banana	plastid	27.23	21.4
GSMUA_Achr4P20520_001	Banana	plastid	24.26	20.87
Zm00001d011533_P001	Maize	plastid	18.31	19.9
Zm00001d035045_P001	Maize	plastid	5.95	16.88
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	15.1	12.22
GSMUA_Achr6P25590_001	Banana	plastid	14.87	11.84

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0010277	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr2G12380_001	EnsemblPlants:GSMUA_Achr2P12380_001	EnsemblPlants:GSMUA_Achr2T12380_001	InterPro:IPR017941
InterPro:IPR036922	UniProt:M0S7C9	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961
TMHMM:TMhelix	UniParc:UPI00029625B3	SEG:seg	:	:	:

Description

Putative Pheophorbide a oxygenase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G12380_001]

Coordinates

chr2:+:14845013..14851430

Molecular Weight (calculated)

49830.0 Da

IEP (calculated)

8.836

GRAVY (calculated)

-0.160

Length

437 amino acids

Sequence
(BLAST)

001: MGLDLVVWWD RTKGRWQVFD DRCPHRLAPL SEGRIDPSGR LQCVYHGWCF DGSGSCKYIP QAPDDGPPVH TFRKACASVY PSFEQNKILW FWPSTDPQCK
101: DIAVKAKPPY IEELDDPSYT STMGMRDLLY GYEVLIENLM DPAHVPYAHH GIMRIPKNSF TVNGDREGGS PIDIRIETSN INGFLAQRDI GYNKFIAPCV
201: FYSAPHRLMS GNGSASSSDV QGGSALKTLQ KQRRFLLIFM CIPVSPGRSR LIYVFPRNFA VWVDQVVPRW IFHVGQNLIL DSDLYLLHVE ERKFAKAGYS
301: NWPKVCFVPT KSDAMVVAFR NWLRKYSNNQ INWGTTSSEQ LLPTPPREQL MDRYWSHVVQ CSSCRDALKV LKALKLSLQI ISIASVGIVA ALNQSMISTI
401: TRTVIVSTAV ICFLASKWLS VFIYKNFYYH DYDHAFR

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.