Factsheet for GSMUA_Achr6P18880_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02700.t01	Wine grape	cytosol	74.81	77.99
KRH64672	Soybean	plastid	75.0	76.42
GSMUA_Achr6P25590_001	Banana	plastid	77.22	75.96
KRH18716	Soybean	golgi	74.63	75.75
KRH53240	Soybean	plastid	74.26	75.66
Solyc06g060310.2.1	Tomato	golgi	74.44	75.14
KRH16353	Soybean	cytosol, golgi, plastid	74.07	74.91
PGSC0003DMT400045302	Potato	plastid	74.07	74.77
PGSC0003DMT400002345	Potato	plastid	73.89	74.58
Solyc11g012850.1.1	Tomato	plastid	73.7	74.39
Os10t0567400-01	Rice	mitochondrion	74.26	74.12
Zm00001d042026_P001	Maize	cytosol	69.44	73.96
EES04263	Sorghum	cytosol	74.07	73.8
Zm00001d011819_P001	Maize	plastid	73.89	73.62
CDY36339	Canola	plastid	69.44	71.56
Bra036948.1-P	Field mustard	plastid	70.37	71.16
CDY14980	Canola	plastid	70.19	70.97
CDY63862	Canola	plastid	69.63	70.81
AT1G44446.1	Thale cress	plastid	69.81	70.34
HORVU0Hr1G007360.2	Barley	mitochondrion	70.56	69.27
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	69.44	69.19
TraesCS3A01G506200.1	Wheat	mitochondrion	70.37	69.09
TraesCS3B01G574300.1	Wheat	mitochondrion	70.37	69.09
TraesCS3D01G514100.1	Wheat	mitochondrion	70.37	69.09
Zm00001d004531_P001	Maize	extracellular, plastid	23.33	45.82
GSMUA_Achr4P20520_001	Banana	plastid	16.3	17.32
GSMUA_Achr7P16230_001	Banana	plastid	15.74	15.29
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	12.22	15.1
GSMUA_Achr4P25150_001	Banana	nucleus	14.81	14.47

Protein Annotations

Gene3D:2.102.10.10	Gene3D:3.30.530.90	MapMan:7.12.6.6.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G18880_001	EnsemblPlants:GSMUA_Achr6P18880_001	EnsemblPlants:GSMUA_Achr6T18880_001	InterPro:IPR017941	InterPro:IPR036922
UniProt:M0T886	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI0002955AD7
SEG:seg	:	:	:	:	:

Description

Chlorophyllide a oxygenase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G18880_001]

Coordinates

chr6:+:13052519..13057411

Molecular Weight (calculated)

61429.3 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.357

Length

540 amino acids

Sequence
(BLAST)

001: MATAAAALSL LPVSLRRPLT SFSKKGNGGR NGIKVFAVFG EEERGSLEKR STWEAIFDVE DPRPRVPHFK GKLLDMNQAL EVAMFDIQYC DWRARQDLLS
101: IMLLHEKVVD VLNPLAREFK SVGTMKKELA ELQEDLAQAH REVHISEARV GAALDKLAYM EKLVNERLLD DRRSDQFNSE AQSPSISSSS IETSQNKLPR
201: RGLNVSGPVK SYHPNLKNFW YPVAFSCDLK DDTMIPIDIF EEPWVIFRGK DGQPGCVQNT CAHRACPLHL GSVTEGRIQC PYHGWEYSTD GKCEKMPSTK
301: LLNVRIRSLP CFEQEGMVWI WPGEAPPMAT IPSLKPPPGF KVHAEIVMEL PIEHGLLLDN LLDLAHAPFT HTSTFAKGWS VPSLVKFLTP ASGMQGYWDP
401: YPIDMEFRPP CIVFSTIGIS KPGKLKGKTT RQCSTHLHQL HVCLPSSRQK TRLLYRMSLD FAPFLKNIPF MHLLWRHFAE KVLNEDLRLV IGQQERMLNG
501: DNVWNLPVSY DKLGIRYRRW RDALERGAKQ LPSTKQDEYL

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.