Factsheet for VIT_18s0001g02700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64672	Soybean	plastid	82.24	80.38
KRH53240	Soybean	plastid	82.05	80.19
KRH18716	Soybean	golgi	82.05	79.89
KRH16353	Soybean	cytosol, golgi, plastid	82.05	79.59
Solyc11g012850.1.1	Tomato	plastid	81.85	79.25
PGSC0003DMT400002345	Potato	plastid	81.66	79.07
Solyc06g060310.2.1	Tomato	golgi	81.47	78.88
PGSC0003DMT400045302	Potato	plastid	81.27	78.69
Bra036948.1-P	Field mustard	plastid	78.96	76.59
CDY14980	Canola	plastid	78.76	76.4
CDY36339	Canola	plastid	77.22	76.34
CDY63862	Canola	plastid	77.8	75.89
GSMUA_Achr6P25590_001	Banana	plastid	80.12	75.59
AT1G44446.1	Thale cress	plastid	78.19	75.56
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	77.99	74.81
Os10t0567400-01	Rice	mitochondrion	77.61	74.31
Zm00001d042026_P001	Maize	cytosol	72.2	73.77
EES04263	Sorghum	cytosol	76.64	73.25
Zm00001d011819_P001	Maize	plastid	75.87	72.51
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	72.78	69.56
HORVU0Hr1G007360.2	Barley	mitochondrion	73.17	68.91
TraesCS3A01G506200.1	Wheat	mitochondrion	72.97	68.73
TraesCS3D01G514100.1	Wheat	mitochondrion	72.97	68.73
TraesCS3B01G574300.1	Wheat	mitochondrion	72.59	68.36
Zm00001d004531_P001	Maize	extracellular, plastid	24.13	45.45
VIT_04s0008g07020.t01	Wine grape	plastid	16.99	16.18
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	13.51	15.12
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	14.86	14.72
VIT_06s0061g00790.t01	Wine grape	plastid	14.48	13.91
VIT_06s0004g00660.t01	Wine grape	cytosol	1.93	12.66
VIT_06s0004g00630.t01	Wine grape	cytosol	2.51	11.71

Protein Annotations

EntrezGene:100247245	wikigene:100247245	Gene3D:2.102.10.10	MapMan:7.12.6.6.1	ProteinID:CCB45483	ProteinID:CCB45483.1
ncoils:Coil	UniProt:F6H0L1	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0016705
GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	EntrezGene:LOC100247245	wikigene:LOC100247245
PFAM:PF00355	PFAM:PF08417	ScanProsite:PS00570	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Ring-hydroxy_dOase_2Fe2S_BS	SUPFAM:SSF50022	SUPFAM:SSF55961
TIGR:TC53335	UniParc:UPI000210A04D	ArrayExpress:VIT_18s0001g02700	EnsemblPlantsGene:VIT_18s0001g02700	EnsemblPlants:VIT_18s0001g02700.t01	unigene:Vvi.10530
RefSeq:XP_002284499	RefSeq:XP_002284499.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:2881700..2884919

Molecular Weight (calculated)

58742.7 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.366

Length

518 amino acids

Sequence
(BLAST)

001: MGGARFQGER RGLRVFAVFG DESGSVERKS TWGTIFDVED PRSKFPQSKG KFLDVNQALE VARFDIQYCD WRARQDLLTI MLLHEKVVEV LNPLAREYKS
101: IGTLKKDLAG LQEELAQAHR QVHISEARVG TALDKLAYME ELVNDRLLQD RNTADSNQTS TSTSPSTSTA SLDMVKRKLP QKSLNVSGPV QPYHPRLKNF
201: WYPVAFSTDL KDDTMIPIDC FEEPWVVFRG QDGKPGCVRN TCAHRACPLH LGSVNEGRIQ CPYHGWEYST DGKCEKMPST RLLNVKIKSL PCLEQEGMIW
301: IWPGSDPPTA TLPSLQPPPG FKIHAEIVME LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PASGLQGYWD PYPIDMEFRP PCMVLSTIGI
401: SKPGKLEGQS TKQCATHLHQ LHVCLPSSRD KTRLLYRMSL DFAPVLQHIP FMQYLWRYFA EKVLNEDLRL VLGQQDRMLM GANVWNCPVS YDKLGVRYRL
501: WRDAVERGAK RLPFTEST

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.