Factsheet for VIT_06s0004g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00630.t01	Wine grape	cytosol	16.2	67.57
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	33.69	67.53
VIT_06s0004g00660.t01	Wine grape	cytosol	11.02	64.56
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	71.27	63.1
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	57.02	60.41
PGSC0003DMT400027602	Potato	plastid	62.85	53.59
CDX94430	Canola	plastid	61.56	53.27
Bra013907.1-P	Field mustard	plastid	61.34	53.18
CDX89405	Canola	plastid	61.34	53.18
Solyc04g040160.2.1	Tomato	plastid	61.56	52.39
AT4G25650.2	Thale cress	plastid	62.42	51.7
Zm00001d002582_P001	Maize	peroxisome	22.46	48.6
EER93253	Sorghum	plastid	53.78	47.43
Zm00001d034523_P001	Maize	plastid	53.13	46.86
TraesCS7D01G137200.1	Wheat	golgi	52.7	46.74
TraesCS5B01G464800.1	Wheat	cytosol	29.16	46.55
TraesCS7B01G038300.1	Wheat	golgi	52.27	46.36
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	52.92	45.97
TraesCS5B01G465000.1	Wheat	golgi	52.27	45.57
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	52.05	45.39
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	50.11	45.31
TraesCS7B01G038100.1	Wheat	mitochondrion	47.3	44.6
Os03t0805900-00	Rice	plastid	26.78	44.29
Os03t0805700-00	Rice	mitochondrion	50.76	44.17
TraesCS5A01G455800.1	Wheat	plastid	51.84	43.96
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	52.27	43.45
HORVU5Hr1G109470.1	Barley	plastid	52.05	42.5
TraesCS7A01G137000.1	Wheat	plastid	52.27	42.38
KXG37317	Sorghum	plastid	46.22	40.61
Os03t0805600-00	Rice	extracellular, mitochondrion	16.85	38.05
Os03t0806300-00	Rice	peroxisome	44.28	35.71
EER90694	Sorghum	cytosol	22.46	35.37
Zm00001d035045_P001	Maize	plastid	10.15	30.52
VIT_06s0061g00790.t01	Wine grape	plastid	32.4	27.83
Zm00001d011533_P001	Maize	plastid	22.03	25.37
VIT_04s0008g07020.t01	Wine grape	plastid	25.7	21.88
VIT_18s0001g02700.t01	Wine grape	cytosol	15.12	13.51

Protein Annotations

EntrezGene:100241560	wikigene:100241560	Gene3D:2.102.10.10	MapMan:35.1	ProteinID:CCB43801	ProteinID:CCB43801.1
UniProt:F6GUK6	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	EntrezGene:LOC100241560	wikigene:LOC100241560
PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI00021091D3
ArrayExpress:VIT_06s0004g00620	EnsemblPlantsGene:VIT_06s0004g00620	EnsemblPlants:VIT_06s0004g00620.t01	RefSeq:XP_002283586	RefSeq:XP_002283586.2	SEG:seg

Description

No Description!

Coordinates

chr6:-:772780..783373

Molecular Weight (calculated)

52883.4 Da

IEP (calculated)

7.733

GRAVY (calculated)

-0.194

Length

463 amino acids

Sequence
(BLAST)

001: MDLPRPSHHG EEKFDWLSQW YPVAPVCDLD KRKPHSKRVI GLDVVVWWDR NESEWKVFDD ACAHRLAPLS EGRIDQWGRL QCVYHGWCFN GSGDCKFIPQ
101: APPDGPPVHT FKKARAAVYP SAVQHGIVWF WPNTDPQFKD IFTKKRPPYI PELDDLSYTK SMGARDFPFG YEILMENVMD PAHVAYAHYG IADREGGTPI
201: EISVKRSAID GFDAERELAR SKFIPPCLYY TCLDFPAYQS NESVSSGLTK EEPSSHMSPK RALLILICVP VSPGNSRLIW TFPRNFGLWT DHIIPRWMLH
301: MSQNLILDSD LYLLHLEERK IMKAGPSNWH KACFVPTKSD AHIVAFRAWL RKYSGGQLDW GTNFSSALPP TPPKEQLMDR YWSHVVNCSS CSVAYKGLQV
401: LEVVLQIFSI ALIGIPVINH GVMSVAARIT AVSMAILCFA ASRWLSYFIY KTFHFHDYTH AFC

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.