Factsheet for TraesCS5B01G465000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	97.74	97.74
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	97.74	97.37
HORVU5Hr1G109470.1	Barley	plastid	95.48	89.42
TraesCS5B01G464800.1	Wheat	cytosol	46.52	85.17
Zm00001d034523_P001	Maize	plastid	73.45	74.29
EER93253	Sorghum	plastid	71.19	72.0
Zm00001d002582_P001	Maize	peroxisome	29.0	71.96
TraesCS7B01G038300.1	Wheat	golgi	69.68	70.88
Os03t0805700-00	Rice	mitochondrion	69.49	69.36
Os03t0805600-00	Rice	extracellular, mitochondrion	26.74	69.27
TraesCS7B01G038100.1	Wheat	mitochondrion	61.96	67.01
KXG37317	Sorghum	plastid	62.71	63.19
Os03t0805900-00	Rice	plastid	32.96	62.5
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	14.5	57.46
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	44.44	54.0
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	22.79	52.38
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.57	52.27
Os03t0806300-00	Rice	peroxisome	56.31	52.09
KRH58922	Soybean	plastid	49.91	50.09
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	49.15	49.9
KRH42828	Soybean	plastid	48.78	48.78
Bra013907.1-P	Field mustard	plastid	47.65	47.38
CDX89405	Canola	plastid	47.65	47.38
CDX94430	Canola	plastid	47.27	46.92
VIT_06s0004g00660.t01	Wine grape	cytosol	6.97	46.84
KRH42827	Soybean	mitochondrion	12.43	45.83
AT4G25650.2	Thale cress	plastid	48.02	45.62
PGSC0003DMT400027602	Potato	plastid	45.39	44.38
Solyc04g040160.2.1	Tomato	plastid	44.44	43.38
Zm00001d035045_P001	Maize	plastid	12.43	42.86
VIT_06s0004g00630.t01	Wine grape	cytosol	8.1	38.74
Zm00001d011533_P001	Maize	plastid	25.8	34.08
TraesCS4B01G311100.1	Wheat	golgi	29.94	30.4
TraesCS6B01G386400.1	Wheat	plastid	24.67	24.17
KRH05339	Soybean	cytosol	6.21	23.91
TraesCS3B01G574300.1	Wheat	mitochondrion	14.69	14.18

Protein Annotations

Gene3D:2.102.10.10	Gene3D:3.30.530.90	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G465000	EnsemblPlants:TraesCS5B01G465000.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:639675655..639677844

Molecular Weight (calculated)

59441.3 Da

IEP (calculated)

8.393

GRAVY (calculated)

-0.237

Length

531 amino acids

Sequence
(BLAST)

001: MDPLSLLVPR ARPSLPLPLR AAAPAISSAR AAAPAPRRWR QRARLSSPVS AVAAEAPSAP SPFGGEEKEK EKEEGQFEWL DQWYPLAPVC DLDPGAPHGK
101: TVLGLRVVAW YDRAVDEWRV FDDACPHRLA PLSEGRIDDK GRLQCVYHGW CFDGRGSCQF IPQAPALGPP VHKNSKACVA SYPSVVQNNI LWFYPRADEE
201: HQDILQRKRP PFIPEIDDPS FVTVYGVRDL PYGYDVLVEN LMDPAHVPYA HKGLMGKLRK KEDPGRVEFD VEGGGPVKMK IEEANIAGFL SEQDNSGYFR
301: YVAPCTFYGS PLPKEEKGEE KKKPPPQFML VFMCVPVSPG KSRVIWAFPR NVGVWLDKVI PRWYYHIGQN AILDSDIYLL HIEERNFAAA GVENWQKAVY
401: VPTSSDNMVI AFRNWFRKHC KSQVGWAAPT IGQLPETPTK DKLMERYWSH VAQCRSCSAA LKTMKALEVA LQVASVAVVG FLAVAKGTLV TSVVQRAAVV
501: SLAVLCFAAS RWLASFIEKN FYFQDYVHAY K

Best Arabidopsis Sequence Match ( AT3G44880.1 )
(BLAST)

001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

Arabidopsis Description

PAOPheophorbide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.