Factsheet for Zm00001d034523_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002582_P001	Maize	peroxisome	36.57	89.72
EER93253	Sorghum	plastid	86.67	86.67
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	74.67	73.82
TraesCS5B01G465000.1	Wheat	golgi	74.29	73.45
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	74.48	73.36
TraesCS5A01G455800.1	Wheat	plastid	72.76	69.96
TraesCS7D01G137200.1	Wheat	golgi	68.95	69.35
TraesCS7B01G038300.1	Wheat	golgi	68.76	69.16
TraesCS5B01G464800.1	Wheat	cytosol	38.1	68.97
Os03t0805600-00	Rice	extracellular, mitochondrion	26.86	68.78
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	66.67	68.36
HORVU5Hr1G109470.1	Barley	plastid	73.33	67.9
Os03t0805700-00	Rice	mitochondrion	67.62	66.73
TraesCS7B01G038100.1	Wheat	mitochondrion	61.33	65.58
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	68.38	64.45
TraesCS7A01G137000.1	Wheat	plastid	68.38	62.87
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	15.43	60.45
Os03t0805900-00	Rice	plastid	31.43	58.93
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	46.48	55.84
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	46.86	53.13
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	23.24	52.81
Os03t0806300-00	Rice	peroxisome	55.81	51.05
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	50.67	50.86
Zm00001d035045_P001	Maize	plastid	14.67	50.0
KRH58922	Soybean	plastid	49.52	49.15
KRH42828	Soybean	plastid	48.76	48.21
VIT_06s0004g00660.t01	Wine grape	cytosol	7.24	48.1
Bra013907.1-P	Field mustard	plastid	48.19	47.38
CDX89405	Canola	plastid	48.19	47.38
CDX94430	Canola	plastid	47.81	46.92
PGSC0003DMT400027602	Potato	plastid	47.24	45.67
KRH42827	Soybean	mitochondrion	12.38	45.14
AT4G25650.2	Thale cress	plastid	47.81	44.9
Solyc04g040160.2.1	Tomato	plastid	46.48	44.85
VIT_06s0004g00630.t01	Wine grape	cytosol	8.95	42.34
Zm00001d011533_P001	Maize	plastid	29.71	38.81
Zm00001d027656_P001	Maize	plastid	31.05	31.35
Zm00001d018358_P001	Maize	plastid	24.57	23.98
KRH05339	Soybean	cytosol	5.71	21.74
Zm00001d004531_P001	Maize	extracellular, plastid	9.52	18.18
Zm00001d042026_P001	Maize	cytosol	14.67	15.19
Zm00001d011819_P001	Maize	plastid	15.62	15.13

Protein Annotations

EntrezGene:100281213	Gene3D:2.102.10.10	Gene3D:3.30.530.90	MapMan:35.1	UniProt:A0A1D6L8D1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491
GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	ProteinID:ONM10494.1	PFAM:PF00355
PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI000220BAD5	EnsemblPlantsGene:Zm00001d034523	EnsemblPlants:Zm00001d034523_P001
EnsemblPlants:Zm00001d034523_T001	SEG:seg	:	:	:	:

Description

Pheophorbide a oxygenase

Coordinates

chr1:+:295617955..295620748

Molecular Weight (calculated)

58952.0 Da

IEP (calculated)

9.212

GRAVY (calculated)

-0.175

Length

525 amino acids

Sequence
(BLAST)

001: MDPLSLLQLP RASRPPMPLA AAAAPLVSAR LSVSGGARSV RRRRRRRAAG LSVFAVATET PRTEEQQPSP SGEERFDWLD QWYPLAPVCD LDPRAPHGKT
101: VLGLSVVAWY DRGAGEWRVF DDACPHRLAP LSEGRIDDRG RLQCVYHGWC FDGAGACKFI PQAPALGPPV HTSSRACVAS YPCVVQNNIL WFYPRADPEH
201: SDVLQRKRPP LIPEIDDPDF VTVYGIRDLP YGYDILVENL MDPAHVPYAH KGIMRGIRKK EDPGRVDYDK EGGGPVKMKI EQANIEGFVS PQERGYFQFV
301: APCTFFGTPF VQEGQKKKAP RVMLVFFCIP VGPGRSRVIW AFPRNVGVWL HHITPRWLYH VGQNLILDSD IFLLHVEERK FAAAGLDNWQ RACYVPTSSD
401: AMVVAFRNWF RKFCKNQVGW ATLQVDQLPP TRTKDQLMER YWSHVVQCRS CNAALKAMKA LEAALQVASV AVVGFLAVAK GTVLTSTVQR AAVVSATVLC
501: FAASRWLANF IQKNFYFQDY IHAYK

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.