Factsheet for TraesCS7B01G038300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G137200.1	Wheat	golgi	94.25	94.25
TraesCS7B01G038100.1	Wheat	mitochondrion	85.44	90.83
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	93.1	87.25
TraesCS7A01G137000.1	Wheat	plastid	93.1	85.11
TraesCS5B01G465000.1	Wheat	golgi	70.88	69.68
TraesCS5B01G464800.1	Wheat	cytosol	38.7	69.66
Zm00001d034523_P001	Maize	plastid	69.16	68.76
EER93253	Sorghum	plastid	68.2	67.81
Zm00001d002582_P001	Maize	peroxisome	27.39	66.82
KXG37317	Sorghum	plastid	63.22	62.62
Os03t0805700-00	Rice	mitochondrion	63.03	61.84
Os03t0805600-00	Rice	extracellular, mitochondrion	24.14	61.46
Os03t0805900-00	Rice	plastid	31.61	58.93
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	14.94	58.21
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	46.36	52.27
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	22.99	51.95
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	43.49	51.95
Os03t0806300-00	Rice	peroxisome	52.68	47.91
KRH58922	Soybean	plastid	48.47	47.83
Bra013907.1-P	Field mustard	plastid	48.47	47.38
CDX89405	Canola	plastid	48.47	47.38
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	47.32	47.23
CDX94430	Canola	plastid	47.89	46.73
KRH42828	Soybean	plastid	46.93	46.14
PGSC0003DMT400027602	Potato	plastid	46.55	44.75
KRH42827	Soybean	mitochondrion	12.26	44.44
AT4G25650.2	Thale cress	plastid	47.51	44.36
Solyc04g040160.2.1	Tomato	plastid	45.21	43.38
Zm00001d035045_P001	Maize	plastid	12.64	42.86
VIT_06s0004g00660.t01	Wine grape	cytosol	6.32	41.77
VIT_06s0004g00630.t01	Wine grape	cytosol	8.62	40.54
TraesCS4B01G311100.1	Wheat	golgi	31.61	31.55
Zm00001d011533_P001	Maize	plastid	23.56	30.6
TraesCS6B01G386400.1	Wheat	plastid	24.33	23.43
KRH05339	Soybean	cytosol	5.75	21.74
TraesCS3B01G574300.1	Wheat	mitochondrion	13.79	13.09

Protein Annotations

Gene3D:2.102.10.10	Gene3D:3.30.530.90	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7B01G038300	EnsemblPlants:TraesCS7B01G038300.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7B:+:37359629..37361574

Molecular Weight (calculated)

58521.5 Da

IEP (calculated)

9.015

GRAVY (calculated)

-0.184

Length

522 amino acids

Sequence
(BLAST)

001: MDPLRILLPR AQAQPLLPLP AGVPAPSFSP RLVPRRRARR HRNGAARMLP ASAVASESPW TEQEPASGEK DERFDWLDQW YPFAPVEDLD LGAPHGKMVL
101: GIRVVAWYDR GAGEWLVFDD ACPHRLAPLS EGRIDDKGRL QCVYHGWCFD GRGACKFIPQ APALGPPVHN NSKACVASYP CVVQNKILWF YPRAEPEHRD
201: VLQRKRPPFI KEIDDPSFVT SFLVRDMPYG YDVLAENLMD PSHVPYAHKG LLRGLPRLVD PGREEYDKEG GVPMAVKVED SSVNGFASSQ GPGYSKFVAP
301: CTYYGSPASK KSEKNKPHIM LVFIIVPVAP GRSRVMWAFP RNFGLWLHKI TPRWFDHIGV NAILDSDMYL LHIEERNFAK AGIENWQKSV YVPTSSDGTV
401: VAFRNWFRKY CRFQVGWAAP TVDQLPATPT KDKLMDRYWS HVAQCTSCSA ALKAMKALEV ALQVASIAVV GLLAVAKGTL LTSVVQRAVI VSAAVLCFAA
501: SRWLADFIQK NFYFEDYVHA YK

Best Arabidopsis Sequence Match ( AT4G25650.2 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKGKYIICI SNSCFNPFTN LQILLAEKID REGGKPLEIN
301: VKKLDNKGFF SKQEWGYSNF IAPCVYRSST DPLPEQEHEY PAPAASDKAA LSKRRLSLIF ICIPVSPGRS RLIWTFPRNF GVFIDKIVPR WVFHIGQNTI
401: LDSDLHLLHV EERKILERGP ENWQKACFIP TKSDANVVTF RRWFNKYSEA RVDWRGKFDP FLLPPTPPRE QLFDRYWSHV ENCSSCKKAH KYLNALEVIL
501: QIASVAMIGV MAVLKQTTMS NVARIAVLVA AVLSFAASKW LSHFIYKTFH YHDYNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.