Factsheet for TraesCS7D01G137200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 4
plasma membrane 2

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G038300.1	Wheat	golgi	94.25	94.25
TraesCS7B01G038100.1	Wheat	mitochondrion	84.1	89.41
TraesCS7A01G137000.1	Wheat	plastid	97.32	88.97
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	92.53	86.71
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	70.5	69.04
Zm00001d034523_P001	Maize	plastid	69.35	68.95
EER93253	Sorghum	plastid	67.82	67.43
Zm00001d002582_P001	Maize	peroxisome	27.59	67.29
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	65.33	66.6
KXG37317	Sorghum	plastid	63.22	62.62
Os03t0805600-00	Rice	extracellular, mitochondrion	24.33	61.95
Os03t0805700-00	Rice	mitochondrion	62.07	60.9
Os03t0805900-00	Rice	plastid	31.23	58.21
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	14.75	57.46
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	46.74	52.7
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	22.8	51.52
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	42.34	50.57
Os03t0806300-00	Rice	peroxisome	52.3	47.56
KRH58922	Soybean	plastid	47.89	47.26
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	47.13	47.04
Bra013907.1-P	Field mustard	plastid	47.89	46.82
CDX89405	Canola	plastid	47.89	46.82
CDX94430	Canola	plastid	47.32	46.17
KRH42828	Soybean	plastid	46.55	45.76
KRH42827	Soybean	mitochondrion	12.45	45.14
VIT_06s0004g00660.t01	Wine grape	cytosol	6.7	44.3
PGSC0003DMT400027602	Potato	plastid	45.79	44.01
AT4G25650.2	Thale cress	plastid	46.93	43.83
Zm00001d035045_P001	Maize	plastid	12.64	42.86
Solyc04g040160.2.1	Tomato	plastid	44.64	42.83
VIT_06s0004g00630.t01	Wine grape	cytosol	8.81	41.44
Zm00001d011533_P001	Maize	plastid	24.52	31.84
TraesCS4D01G309000.1	Wheat	mitochondrion	31.23	30.75
TraesCS6D01G336000.1	Wheat	golgi	24.14	23.25
KRH05339	Soybean	cytosol	5.75	21.74
TraesCS3D01G514100.1	Wheat	mitochondrion	13.79	13.09

Protein Annotations

Gene3D:2.102.10.10	Gene3D:3.30.530.90	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7D01G137200	EnsemblPlants:TraesCS7D01G137200.1	TIGR:cd03480	SEG:seg	:

Description

No Description!

Coordinates

chr7D:+:88147822..88149857

Molecular Weight (calculated)

58666.7 Da

IEP (calculated)

9.343

GRAVY (calculated)

-0.225

Length

522 amino acids

Sequence
(BLAST)

001: MDPLRLLLPR AQAQPLLPLP AGVPAPSVRP RLVPRRRARR HRNGAARMLP ASAVASESPW TEQDPPSGEK EERFDWLDQW YPFAPVEDLD PGAPHGKMVL
101: GIRVVAWYDR GAGEWRVFED ACPHRLAPLS EGRIDDKGRL QCVYHGWCFD GRGACKFIPQ APALGPPVHT NSKACVASYP CVVQNKLLWF YPRAGPEHRD
201: VLQRKRPPFI PEIDDPSFVT SFLIRDMPFG YDVLAENLMD PSHVPYAHKG LFRGLPRLVD PGREEYDKEG GVPMAVKVEE SSVNGFASSQ GPGYSKFVAP
301: CTYYGSPASK KSEKNKPHLM IVFIIVPVAP GRSRVMWAYP RNFGLWLHKI TPRWFDHIGV NVILDSDMYL LHLEERNFAK AGIENWQKSV YVPTTSDGTV
401: VAFRNWFRKH CRFQVGWAAP TVDQLPPTPT KDKLMDRYWS HVAQCRSCSA ALKAMRALEV ALQVASIAVV GLLAVAKGTL LTSVAQRAVV VSVAVLCFAA
501: SRWLADFIQK NFYFEDYVHA YK

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.