Factsheet for TraesCS5D01G466800.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:

plastid 4
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G465000.1	Wheat	golgi	97.37	97.74
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	96.25	96.61
HORVU5Hr1G109470.1	Barley	plastid	94.93	89.24
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	84.43	87.89
Zm00001d034523_P001	Maize	plastid	73.36	74.48
Zm00001d002582_P001	Maize	peroxisome	29.08	72.43
EER93253	Sorghum	plastid	70.73	71.81
TraesCS7D01G137200.1	Wheat	golgi	69.04	70.5
Os03t0805600-00	Rice	extracellular, mitochondrion	26.64	69.27
Os03t0805700-00	Rice	mitochondrion	69.04	69.17
KXG37317	Sorghum	plastid	62.66	63.38
Os03t0805900-00	Rice	plastid	32.83	62.5
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	14.45	57.46
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	44.65	54.46
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.97	52.92
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	22.89	52.81
Os03t0806300-00	Rice	peroxisome	56.29	52.26
KRH58922	Soybean	plastid	50.09	50.47
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	49.16	50.1
KRH42828	Soybean	plastid	49.16	49.34
CDX89405	Canola	plastid	48.03	47.94
Bra013907.1-P	Field mustard	plastid	48.03	47.94
CDX94430	Canola	plastid	47.65	47.48
VIT_06s0004g00660.t01	Wine grape	cytosol	6.94	46.84
KRH42827	Soybean	mitochondrion	12.57	46.53
AT4G25650.2	Thale cress	plastid	48.59	46.33
PGSC0003DMT400027602	Potato	plastid	45.78	44.94
Solyc04g040160.2.1	Tomato	plastid	44.65	43.75
Zm00001d035045_P001	Maize	plastid	12.38	42.86
VIT_06s0004g00630.t01	Wine grape	cytosol	8.07	38.74
Zm00001d011533_P001	Maize	plastid	25.89	34.33
TraesCS4D01G309000.1	Wheat	mitochondrion	30.21	30.38
TraesCS6D01G336000.1	Wheat	golgi	24.58	24.17
KRH05339	Soybean	cytosol	6.19	23.91
TraesCS3D01G514100.1	Wheat	mitochondrion	14.45	14.0

Protein Annotations

Gene3D:2.102.10.10	Gene3D:3.30.530.90	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G466800	EnsemblPlants:TraesCS5D01G466800.3	TIGR:cd03480	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:509134684..509136916

Molecular Weight (calculated)

59564.5 Da

IEP (calculated)

8.816

GRAVY (calculated)

-0.262

Length

533 amino acids

Sequence
(BLAST)

001: MDPLSLLVPR ARPSLPLPLR AAAPATSSAR AAAPAPRRWR QRARLPSPVS AVAAEAPSAP SPSGGEEKEK EKEEGQFDWL DQWYPLAPVC DLDPGAPHGK
101: TVLGLRVVAW YDRAVDEWRV FDDACPHRLA PLSEGRIDDK GRLQCVYHGW CFDGRGSCQF IPQAPALGPP VHKNSKACVA SYPSVVQNNI LWFYPRADEE
201: HQDILQRKRP PFIPEIDDPS FVTVYGVRDL PYGYDVLVEN LMDPAHVPYA HKGLMGKLRK KEDPGRVEFD VEGGGPVKMK IAEADIAGFL SEQDNSGYFR
301: YVAPCTFYGS PLPKEEKGQE KKKKKKPPQF MLVFMCVPVS PGKSRVIWAF PRNVGVWLDK VIPRWYYHIG QNAILDSDIY LLHIEERNFA AAGIENWQKA
401: VYVPTSSDNM VIAFRNWFRK HCKSQVGWAA PTVGQLPETP TKDKLMERYW SHVAQCRSCS AALKGMKALE VALQIASVAV VGFLAVAKGT LVTSVVQRAA
501: VVSLAVLCFA ASRWLASFIE KNFYFQDYVH AYK

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.