Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94430 | Canola | plastid | 80.86 | 84.49 |
| Bra013907.1-P | Field mustard | plastid | 80.68 | 84.46 |
| CDX89405 | Canola | plastid | 80.68 | 84.46 |
| Solyc04g039870.1.1 | Tomato | cytosol, peroxisome, plastid | 16.1 | 67.16 |
| PGSC0003DMT400007678 | Potato | cytosol, peroxisome, plasma membrane | 26.48 | 64.07 |
| VIT_06s0004g00610.t01 | Wine grape | cytosol, plastid | 59.57 | 63.67 |
| KRH42828 | Soybean | plastid | 59.93 | 63.09 |
| VIT_06s0004g00620.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 51.7 | 62.42 |
| KRH58922 | Soybean | plastid | 58.86 | 62.19 |
| KRH42827 | Soybean | mitochondrion | 15.38 | 59.72 |
| GSMUA_Achr2P12380_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 45.26 | 57.89 |
| PGSC0003DMT400027602 | Potato | plastid | 55.1 | 56.72 |
| Solyc04g040160.2.1 | Tomato | plastid | 54.56 | 56.07 |
| Zm00001d002582_P001 | Maize | peroxisome | 18.96 | 49.53 |
| VIT_06s0004g00630.t01 | Wine grape | cytosol | 9.66 | 48.65 |
| TraesCS5D01G466800.3 | Wheat | mitochondrion, plasma membrane, plastid | 46.33 | 48.59 |
| EER93253 | Sorghum | plastid | 45.62 | 48.57 |
| TraesCS5A01G456000.1 | Wheat | plasma membrane, plastid | 45.62 | 48.02 |
| TraesCS5B01G465000.1 | Wheat | golgi | 45.62 | 48.02 |
| Zm00001d034523_P001 | Maize | plastid | 44.9 | 47.81 |
| TraesCS7B01G038300.1 | Wheat | golgi | 44.36 | 47.51 |
| TraesCS5B01G464800.1 | Wheat | cytosol | 24.51 | 47.24 |
| TraesCS7D01G137200.1 | Wheat | golgi | 43.83 | 46.93 |
| VIT_06s0004g00660.t01 | Wine grape | cytosol | 6.62 | 46.84 |
| TraesCS5A01G455800.1 | Wheat | plastid | 44.9 | 45.97 |
| Os03t0805700-00 | Rice | mitochondrion | 43.65 | 45.86 |
| Os03t0805900-00 | Rice | plastid | 22.9 | 45.71 |
| HORVU5Hr1G109470.1 | Barley | plastid | 45.98 | 45.33 |
| TraesCS7B01G038100.1 | Wheat | mitochondrion | 39.71 | 45.21 |
| TraesCS5D01G466600.1 | Wheat | mitochondrion, plasma membrane, plastid | 41.14 | 44.92 |
| HORVU7Hr1G028370.3 | Barley | mitochondrion, peroxisome, plasma membrane | 44.36 | 44.52 |
| TraesCS7A01G137000.1 | Wheat | plastid | 43.65 | 42.73 |
| KXG37317 | Sorghum | plastid | 39.89 | 42.31 |
| Os03t0805600-00 | Rice | extracellular, mitochondrion | 14.67 | 40.0 |
| Os03t0806300-00 | Rice | peroxisome | 37.92 | 36.93 |
| EER90694 | Sorghum | cytosol | 19.14 | 36.39 |
| Zm00001d035045_P001 | Maize | plastid | 8.94 | 32.47 |
| AT3G44880.1 | Thale cress | plastid | 27.37 | 28.49 |
| Zm00001d011533_P001 | Maize | plastid | 19.5 | 27.11 |
| KRH05339 | Soybean | cytosol | 6.44 | 26.09 |
| AT2G24820.1 | Thale cress | plastid | 22.72 | 23.56 |
| AT1G44446.1 | Thale cress | plastid | 14.85 | 15.49 |
Protein Annotations
| Gene3D:2.102.10.10 | MapMan:35.1 | EntrezGene:828670 | Symbol:ACD1-LIKE | ProteinID:AEE85088.1 | ProteinID:AEE85089.1 |
| EMBL:AF424575 | ArrayExpress:AT4G25650 | EnsemblPlantsGene:AT4G25650 | RefSeq:AT4G25650 | TAIR:AT4G25650 | RefSeq:AT4G25650-TAIR-G |
| EnsemblPlants:AT4G25650.2 | TAIR:AT4G25650.2 | EMBL:AY056168 | EMBL:AY062731 | EMBL:AY344062 | Unigene:At.3350 |
| EMBL:BT002586 | ProteinID:CAB43696.1 | ProteinID:CAB81375.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009528 | GO:GO:0009536 | GO:GO:0009706 | GO:GO:0009941 |
| GO:GO:0010277 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0046872 |
| GO:GO:0051536 | GO:GO:0051537 | GO:GO:0055114 | InterPro:IPR017941 | InterPro:IPR036922 | RefSeq:NP_567725.1 |
| RefSeq:NP_849444.1 | PFAM:PF00355 | PFAM:PF08417 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51296 | PANTHER:PTHR21266 | PANTHER:PTHR21266:SF38 | InterPro:PaO | UniProt:Q8W496 |
| InterPro:Rieske_2Fe-2S | InterPro:Rieske_2Fe-2S_sf | SUPFAM:SSF50022 | SUPFAM:SSF55961 | TMHMM:TMhelix | UniParc:UPI00000AC6B2 |
| SEG:seg | : | : | : | : | : |
Description
PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
Coordinates
chr4:-:13080901..13083197
Molecular Weight (calculated)
63821.7 Da
IEP (calculated)
8.813
GRAVY (calculated)
-0.294
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKGKYIICI SNSCFNPFTN LQILLAEKID REGGKPLEIN
301: VKKLDNKGFF SKQEWGYSNF IAPCVYRSST DPLPEQEHEY PAPAASDKAA LSKRRLSLIF ICIPVSPGRS RLIWTFPRNF GVFIDKIVPR WVFHIGQNTI
401: LDSDLHLLHV EERKILERGP ENWQKACFIP TKSDANVVTF RRWFNKYSEA RVDWRGKFDP FLLPPTPPRE QLFDRYWSHV ENCSSCKKAH KYLNALEVIL
501: QIASVAMIGV MAVLKQTTMS NVARIAVLVA AVLSFAASKW LSHFIYKTFH YHDYNHAVV
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKGKYIICI SNSCFNPFTN LQILLAEKID REGGKPLEIN
301: VKKLDNKGFF SKQEWGYSNF IAPCVYRSST DPLPEQEHEY PAPAASDKAA LSKRRLSLIF ICIPVSPGRS RLIWTFPRNF GVFIDKIVPR WVFHIGQNTI
401: LDSDLHLLHV EERKILERGP ENWQKACFIP TKSDANVVTF RRWFNKYSEA RVDWRGKFDP FLLPPTPPRE QLFDRYWSHV ENCSSCKKAH KYLNALEVIL
501: QIASVAMIGV MAVLKQTTMS NVARIAVLVA AVLSFAASKW LSHFIYKTFH YHDYNHAVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.