CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034523_P001	Maize	plastid	86.67	86.67
Zm00001d002582_P001	Maize	peroxisome	33.9	83.18
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	72.19	71.37
TraesCS5B01G465000.1	Wheat	golgi	72.0	71.19
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	71.81	70.73
TraesCS7B01G038300.1	Wheat	golgi	67.81	68.2
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	66.48	68.16
TraesCS7D01G137200.1	Wheat	golgi	67.43	67.82
TraesCS5A01G455800.1	Wheat	plastid	70.48	67.77
Os03t0805600-00	Rice	extracellular, mitochondrion	26.29	67.32
TraesCS5B01G464800.1	Wheat	cytosol	36.57	66.21
HORVU5Hr1G109470.1	Barley	plastid	71.43	66.14
Os03t0805700-00	Rice	mitochondrion	65.9	65.04
TraesCS7B01G038100.1	Wheat	mitochondrion	60.76	64.97
KXG37317	Sorghum	plastid	64.19	63.95
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	67.43	63.55
TraesCS7A01G137000.1	Wheat	plastid	67.62	62.17
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	15.81	61.94
Os03t0805900-00	Rice	plastid	31.43	58.93
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	46.67	56.06
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.43	53.78
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	23.62	53.68
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	51.24	51.43
Os03t0806300-00	Rice	peroxisome	55.05	50.35
KRH58922	Soybean	plastid	49.71	49.34
EER90694	Sorghum	cytosol	27.62	49.32
Zm00001d035045_P001	Maize	plastid	14.29	48.7
Bra013907.1-P	Field mustard	plastid	49.33	48.5
CDX89405	Canola	plastid	49.33	48.5
KRH42828	Soybean	plastid	48.76	48.21
VIT_06s0004g00660.t01	Wine grape	cytosol	7.24	48.1
KRH42827	Soybean	mitochondrion	13.14	47.92
CDX94430	Canola	plastid	48.76	47.85
AT4G25650.2	Thale cress	plastid	48.57	45.62
PGSC0003DMT400027602	Potato	plastid	47.05	45.49
Solyc04g040160.2.1	Tomato	plastid	46.48	44.85
VIT_06s0004g00630.t01	Wine grape	cytosol	8.76	41.44
Zm00001d011533_P001	Maize	plastid	28.0	36.57
EER95507	Sorghum	plastid	32.38	32.44
EES05942	Sorghum	plastid	24.76	24.16
KRH05339	Soybean	cytosol	6.1	23.19
EES04263	Sorghum	cytosol	15.81	15.31

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	UniProt:C5WW66	EnsemblPlants:EER93253	ProteinID:EER93253	ProteinID:EER93253.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972	GO:GO:0009987	GO:GO:0010277
GO:GO:0016491	GO:GO:0016787	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922
PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	EnsemblPlantsGene:SORBI_3001G048400	SUPFAM:SSF50022	SUPFAM:SSF55961	unigene:Sbi.8706
UniParc:UPI0001A82A7A	RefSeq:XP_002466255.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:3544021..3546412

Molecular Weight (calculated)

58851.8 Da

IEP (calculated)

8.801

GRAVY (calculated)

-0.181

Length

525 amino acids

Sequence
(BLAST)

001: MDPLSLLQIP RASRPPLPLS AAAAPLSCRR LNVSGGARPV PRRLQRRAAR LSVSAVATDT PRTEEEQPSP SPSPSPSGKE QFDWLDQWYP FAPVCDLDPR
101: APHGKTVLGL SVVAWYDRGA GEWRVFDDAC PHRLAPLSEG RIDDKGRLQC VYHGWCFDGA GACKFIPQAP ALGPPVHTSP KACVASYPCV VQNNILWFYP
201: RADPEYKDVL QRKRPPFIPE IDDPEFVTVY GIRDLPYGYD ILIENLLDPA HVPYAHKGII RGILEYDREG GGPSKMKIEQ ANIQGFVSPQ ERGYFQFVAP
301: CTSFAAPFPQ PQEDKKKKVP RVMLVFLCIP VSPGRSRVIW AFPRNIGVWL HHITPRWLYH VGQNLVLDSD IFLLHVEERK FATVGLDNWQ KACYVPTSSD
401: SMVVAFRNWF KKFSKNQIGW ATPQIDQLPP TPTKDQLMER YWSHVAQCTS CNAALKAMKA LEVVLQVASV AVVGFLAVAK ETLVTSTVQR AAVVSAAVLC
501: FAASRWLANF IQKNFYFQDY IHAYK

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.