CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011819_P001	Maize	plastid	95.57	95.57
Zm00001d042026_P001	Maize	cytosol	85.79	91.72
Os10t0567400-01	Rice	mitochondrion	91.14	91.31
TraesCS3D01G514100.1	Wheat	mitochondrion	85.61	84.36
HORVU0Hr1G007360.2	Barley	mitochondrion	85.61	84.36
TraesCS3A01G506200.1	Wheat	mitochondrion	85.42	84.18
TraesCS3B01G574300.1	Wheat	mitochondrion	85.06	83.82
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	81.55	81.55
VIT_18s0001g02700.t01	Wine grape	cytosol	73.25	76.64
KRH64672	Soybean	plastid	73.62	75.28
KRH18716	Soybean	golgi	73.43	74.81
PGSC0003DMT400002345	Potato	plastid	73.62	74.58
Solyc11g012850.1.1	Tomato	plastid	73.43	74.39
KRH16353	Soybean	cytosol, golgi, plastid	73.25	74.34
GSMUA_Achr6P25590_001	Banana	plastid	75.09	74.13
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	73.8	74.07
CDY36339	Canola	plastid	71.59	74.05
CDY63862	Canola	plastid	72.51	74.01
Bra036948.1-P	Field mustard	plastid	72.88	73.97
CDY14980	Canola	plastid	72.69	73.78
PGSC0003DMT400045302	Potato	plastid	72.69	73.64
KRH53240	Soybean	plastid	71.96	73.58
Solyc06g060310.2.1	Tomato	golgi	72.32	73.27
AT1G44446.1	Thale cress	plastid	71.77	72.57
Zm00001d004531_P001	Maize	extracellular, plastid	25.83	50.91
EES05942	Sorghum	plastid	16.24	16.36
EER95507	Sorghum	plastid	15.31	15.84
EER93253	Sorghum	plastid	15.31	15.81
KXG37317	Sorghum	plastid	14.21	14.61
EER90694	Sorghum	cytosol	4.98	9.18

Protein Annotations

Gene3D:2.102.10.10	MapMan:7.12.6.6.1	EntrezGene:8077402	UniProt:C5XIM9	ncoils:Coil	EnsemblPlants:EES04263
ProteinID:EES04263	ProteinID:EES04263.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009706	GO:GO:0009987
GO:GO:0010277	GO:GO:0015995	GO:GO:0016020	GO:GO:0016491	GO:GO:0016705	GO:GO:0042651
GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417
ScanProsite:PS00570	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19	InterPro:PaO	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	InterPro:Ring-hydroxy_dOase_2Fe2S_BS	EnsemblPlantsGene:SORBI_3003G435800	SUPFAM:SSF50022	SUPFAM:SSF55961	unigene:Sbi.3772
UniParc:UPI0001A857B8	RefSeq:XP_002459143.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:73702235..73705944

Molecular Weight (calculated)

60985.5 Da

IEP (calculated)

8.020

GRAVY (calculated)

-0.294

Length

542 amino acids

Sequence
(BLAST)

001: MNTVSSLSLV PHLLIKPSIA CFSRKGVGRY GGIKVYAVLR EDGAEFAKNN NLEALFHVDD PGPRCPIKKG KFLDVNEALE VVRFDIQYCD WRARQDLLTI
101: MLLHNKVVEV LNPLAREFKS IGTLRKELAE LQQELEKAHN QVHLSEARVS SALDKLAHME TLVNDRLLPP DGASGTSTAE STSLVPSTSS TAHVRAKKQP
201: RRSLNVSGPV KPYNPSLKNF WYPVAFSSDL KDDTMVPIDC FEEQWVIFRG KDGRPGCVQN TCAHRACPLH LGSVNEGRIQ CPYHGWEYST DGKCEKMPST
301: KMLNVRIQSL PCFEQEGMVW IWPGDDPPKA TIPSLLPPSG FTIHAEIVME LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PASGLQGYWD
401: PYPIDMEFRP PCMVLSTIGI SKPGKLEGKS TQQCSTHLHQ LHVCLPSSRN KTRLLYRMSL DFAPWLKHVP LMHLLWSHFA EKVLNEDLRL VLGQQERMIN
501: GANIWNWPVS YDKLGIRYRL WRDAVERGSD RLPFSNQAES GS

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.