Factsheet for Zm00001d011819_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04263	Sorghum	cytosol	95.57	95.57
Os10t0567400-01	Rice	mitochondrion	91.14	91.31
Zm00001d042026_P001	Maize	cytosol	84.13	89.94
TraesCS3D01G514100.1	Wheat	mitochondrion	85.24	84.0
HORVU0Hr1G007360.2	Barley	mitochondrion	85.24	84.0
TraesCS3A01G506200.1	Wheat	mitochondrion	85.06	83.82
TraesCS3B01G574300.1	Wheat	mitochondrion	84.87	83.64
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	81.55	81.55
VIT_18s0001g02700.t01	Wine grape	cytosol	72.51	75.87
KRH64672	Soybean	plastid	73.43	75.09
KRH18716	Soybean	golgi	73.06	74.44
KRH53240	Soybean	plastid	72.51	74.15
KRH16353	Soybean	cytosol, golgi, plastid	72.88	73.97
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	73.62	73.89
PGSC0003DMT400002345	Potato	plastid	72.88	73.83
Solyc11g012850.1.1	Tomato	plastid	72.32	73.27
GSMUA_Achr6P25590_001	Banana	plastid	74.17	73.22
PGSC0003DMT400045302	Potato	plastid	71.96	72.9
CDY36339	Canola	plastid	70.11	72.52
Solyc06g060310.2.1	Tomato	golgi	71.4	72.34
CDY63862	Canola	plastid	70.85	72.32
Bra036948.1-P	Field mustard	plastid	71.22	72.28
CDY14980	Canola	plastid	71.03	72.1
AT1G44446.1	Thale cress	plastid	70.66	71.46
Zm00001d004531_P001	Maize	extracellular, plastid	26.75	52.73
Zm00001d002582_P001	Maize	peroxisome	8.67	21.96
Zm00001d018358_P001	Maize	plastid	16.05	16.17
Zm00001d027656_P001	Maize	plastid	15.5	16.15
Zm00001d034523_P001	Maize	plastid	15.13	15.62
Zm00001d011533_P001	Maize	plastid	10.33	13.93
Zm00001d035045_P001	Maize	plastid	3.87	13.64

Protein Annotations

EntrezGene:100284976	Gene3D:2.102.10.10	MapMan:7.12.6.6.1	ProteinID:AQK98070.1	UniProt:B6TZB6	EMBL:BT063446
ncoils:Coil	EMBL:EU970331	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0016705	GO:GO:0051537
GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	ScanProsite:PS00570
PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Ring-hydroxy_dOase_2Fe2S_BS	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI000182EC1A	EnsemblPlantsGene:Zm00001d011819	EnsemblPlants:Zm00001d011819_P001
EnsemblPlants:Zm00001d011819_T001	SEG:seg	:	:	:	:

Description

Chlorophyllide a oxygenase chloroplastic

Coordinates

chr8:+:162062147..162065451

Molecular Weight (calculated)

60892.5 Da

IEP (calculated)

8.533

GRAVY (calculated)

-0.279

Length

542 amino acids

Sequence
(BLAST)

001: MNTVALLSLA PQLLIKPSLT CFSRKGVGRY GGIKVYAVLR DDGAEFAKNN NLEALFHVDD PGPRVPIKKG KFLDVNEALE VVRFDIQYCD WRARHDLLTI
101: MVLHNKVVEV LNPLAREFKS IGTLRKELAE LQQELAKAHN QVHLSETRVS SALDKLAHME TLVNDRLLPP DGASSTSTAQ PTSLVPSTSS TARVRAKKPP
201: RRGLNVSGPV KPYNPSLKNF WYPVAFSSDL KDDTMVPIAC FEEQWVIFRG KDGRPGCVQN TCAHRACPLH LGSVNEGRIQ CPYHGWEYST DGKCEKMPST
301: KMLNVRIQSL PCFEQEGMVW IWPGDDPPKA TIPSLLPPSG FTVHAEIVME LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PASGLQGYWD
401: PYPIDMEFRP PCMVLSTIGI SKPGKLEGKS TQQCSTHLHQ LHVCLPSSRN KTRLLYRMSL DFAPWLKHVP LMHLLWSHFA EKVLNEDLRL VLGQQERMIN
501: GANVWNWPVS YDKLGVRYRL WRDTVERGSE RLPFSNQAES GS

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.