Factsheet for Zm00001d027656_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95507	Sorghum	plastid	95.58	94.85
Os03t0146400-01	Rice	plastid	88.08	86.58
TraesCS4B01G311100.1	Wheat	golgi	83.46	82.98
TraesCS4A01G411000.1	Wheat	plastid	85.0	82.77
TraesCS4D01G309000.1	Wheat	mitochondrion	84.23	82.64
HORVU4Hr1G079330.1	Barley	plastid	84.04	81.53
HORVU4Hr1G079260.2	Barley	peroxisome	76.54	80.73
GSMUA_Achr4P25150_001	Banana	nucleus	73.85	69.44
VIT_06s0061g00790.t01	Wine grape	plastid	70.38	67.9
KRH30552	Soybean	plastid	70.77	67.52
Solyc11g066440.1.1	Tomato	plastid	69.23	67.04
CDY29727	Canola	plastid	67.88	66.1
Bra037607.1-P	Field mustard	plastid	67.88	65.86
AT3G44880.1	Thale cress	plastid	67.69	65.55
PGSC0003DMT400001216	Potato	plastid	68.85	65.21
KRH25120	Soybean	plastid	70.38	65.01
CDY20340	Canola	plastid	67.69	61.54
Zm00001d002582_P001	Maize	peroxisome	13.85	33.64
Zm00001d034523_P001	Maize	plastid	31.35	31.05
Zm00001d035045_P001	Maize	plastid	7.5	25.32
Zm00001d018358_P001	Maize	plastid	24.62	23.79
Zm00001d011533_P001	Maize	plastid	18.08	23.38
Zm00001d042026_P001	Maize	cytosol	15.58	15.98
Zm00001d011819_P001	Maize	plastid	16.15	15.5
Zm00001d004531_P001	Maize	extracellular, plastid	7.5	14.18

Protein Annotations

EntrezGene:103631716	Gene3D:2.102.10.10	MapMan:7.12.6.7.5	UniProt:A0A1D6JNJ8	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009056
GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607
GO:GO:0009791	GO:GO:0009816	GO:GO:0009908	GO:GO:0009941	GO:GO:0009987	GO:GO:0010154
GO:GO:0010277	GO:GO:0015996	GO:GO:0016491	GO:GO:0032441	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	ProteinID:ONL93615.1	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296
PANTHER:PTHR21266	PANTHER:PTHR21266:SF24	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022
SUPFAM:SSF55961	UniParc:UPI0002215EE2	EnsemblPlantsGene:Zm00001d027656	EnsemblPlants:Zm00001d027656_P001	EnsemblPlants:Zm00001d027656_T001	SEG:seg

Description

lethal leaf spot1Lethal leaf-spot 1

Coordinates

chr1:+:10261506..10265855

Molecular Weight (calculated)

58149.3 Da

IEP (calculated)

7.848

GRAVY (calculated)

-0.266

Length

520 amino acids

Sequence
(BLAST)

001: MRATIPALSL LVTPRLPSLA VPLAGGRLRV GGRSRTRLRV AAPTSVPGEA AEQAEPSTSA PESGEKFSWR DHWYPVSLVE DLDPSRPTPF QLLNRDLVIW
101: KEPKSGEWVA LDDRCPHRLA PLSEGRIDET GCLQCSYHGW SFDGSGACTK IPQAMPEGPE ARAVRSPKAC AIKFPTLVSQ GLLFVWPDEN GWEKAAATKP
201: PMLPKEFEDP AFSTVTIQRD LFYGYDTLME NVSDPSHIEF AHHKVTGRRD RARPLTFRME SSGAWGYSGA NSGNPRITAT FEAPCYALNK IEIDTKLPIF
301: GDQKWVIWIC SFNIPMAPGK TRSIVCSARN FFQFTMPGKA WWQLVPRWYE HWTSNLVYDG DMIVLQGQEK IFLAATKESS TDINQQYTKI TFTPTQADRF
401: VLAFRTWLRK FGNSQPEWFG NPTQEALPST VLSKREMLDR YEQHTLKCSS CKGAYNAFQN LQKVFMGATV VCCAAAGIPP DVQLRLLIGA AALVSAAIAY
501: AFHELQKNFV FVDYVHADID

Best Arabidopsis Sequence Match ( AT3G44880.1 )
(BLAST)

001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

Arabidopsis Description

PAOPheophorbide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.