Factsheet for Solyc11g066440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001216	Potato	plastid	95.9	93.81
VIT_06s0061g00790.t01	Wine grape	plastid	72.44	72.17
CDY29727	Canola	plastid	71.14	71.54
AT3G44880.1	Thale cress	plastid	71.51	71.51
Bra037607.1-P	Field mustard	plastid	71.14	71.27
KRH30552	Soybean	plastid	72.07	71.01
TraesCS4B01G311100.1	Wheat	golgi	68.16	69.98
HORVU4Hr1G079260.2	Barley	peroxisome	64.25	69.98
EER95507	Sorghum	plastid	68.16	69.85
Zm00001d027656_P001	Maize	plastid	67.04	69.23
KRH25120	Soybean	plastid	72.25	68.92
TraesCS4A01G411000.1	Wheat	plastid	68.16	68.54
TraesCS4D01G309000.1	Wheat	mitochondrion	67.6	68.49
Os03t0146400-01	Rice	plastid	67.23	68.24
HORVU4Hr1G079330.1	Barley	plastid	67.78	67.91
CDY20340	Canola	plastid	71.51	67.13
GSMUA_Achr4P25150_001	Banana	nucleus	65.74	63.83
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	9.12	36.57
Solyc04g024920.1.1	Tomato	extracellular	4.66	32.05
Solyc04g040160.2.1	Tomato	plastid	27.75	27.39
Solyc12g096550.1.1	Tomato	plastid	22.72	22.34
Solyc06g060310.2.1	Tomato	golgi	14.15	14.21
Solyc11g012850.1.1	Tomato	plastid	13.78	13.83

Protein Annotations

Gene3D:2.102.10.10	MapMan:7.12.6.7.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	UniProt:K4D9Q1	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296
PANTHER:PTHR21266	PANTHER:PTHR21266:SF24	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022
SUPFAM:SSF55961	EnsemblPlantsGene:Solyc11g066440.1	EnsemblPlants:Solyc11g066440.1.1	UniParc:UPI0002769E36	SEG:seg	:

Description

Pheophorbide a oxygenase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G44880) UniProtKB/Swiss-Prot;Acc:Q9FYC2]

Coordinates

chr11:-:52201057..52204643

Molecular Weight (calculated)

60750.1 Da

IEP (calculated)

6.926

GRAVY (calculated)

-0.392

Length

537 amino acids

Sequence
(BLAST)

001: MVSSLLLPTP QILSISSSLQ SSLPFKPHNF LQITRKKNTL ISSPLRVAAP PTTTTATEEE EKLDSKSSDI EDTENDEQDS SSKFSWRDHW YPVSLVEDLD
101: PSLPTPFQLL NRDIVIWFDK SGSQWVALDD KCPHRLAPLS EGRLDENGDL QCSYHGWSFN GCGSCTRIPQ AASQGPEAKA FQSPRACATR FPTMVSQGLL
201: FVWPDENGWE RAQATKPPML PEDFDKPEFA TVTIQRDLFY GYDTLMENVS DPSHIDFAHH KVTGRRDRAK PLPFKMEASG PWGFAGANND KPKITAKFVA
301: PCYSMNKIEI DTKLPIVGDQ KWVIWICSFN VPMAPGKTRS IVCSARNFFQ FTVPGPAWWQ VFPRWQEHWT SNKVYDGDMI VLQGQEKVFL SKSKENGTDV
401: NKEYTKLTFT PTQADRFVLA FRNWLRRHGN SQPEWFGSTD NQPLPSTVLS KRQMMDRFEQ HTLKCSSCKK AYYTFEKLQK LLIGSVVVCC ASAGIPADVN
501: LRIILGSLAI ISAGLAYILH ELQKNFIFVD YVHAEID

Best Arabidopsis Sequence Match ( AT3G44880.1 )
(BLAST)

001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

Arabidopsis Description

PAOPheophorbide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.