CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30552	Soybean	plastid	93.25	96.33
VIT_06s0061g00790.t01	Wine grape	plastid	71.23	74.4
Solyc11g066440.1.1	Tomato	plastid	68.92	72.25
Os03t0146400-01	Rice	plastid	66.43	70.7
Zm00001d027656_P001	Maize	plastid	65.01	70.38
EER95507	Sorghum	plastid	65.19	70.04
PGSC0003DMT400001216	Potato	plastid	68.03	69.76
TraesCS4B01G311100.1	Wheat	golgi	64.65	69.6
CDY29727	Canola	plastid	65.9	69.48
Bra037607.1-P	Field mustard	plastid	65.9	69.22
TraesCS4D01G309000.1	Wheat	mitochondrion	65.01	69.06
TraesCS4A01G411000.1	Wheat	plastid	65.19	68.73
AT3G44880.1	Thale cress	plastid	65.36	68.53
HORVU4Hr1G079260.2	Barley	peroxisome	59.86	68.36
HORVU4Hr1G079330.1	Barley	plastid	64.65	67.91
GSMUA_Achr4P25150_001	Banana	nucleus	64.83	66.0
CDY20340	Canola	plastid	66.43	65.38
KRH58922	Soybean	plastid	28.06	29.87
KRH42828	Soybean	plastid	27.89	29.57
KRH42827	Soybean	mitochondrion	6.75	26.39
KRH05339	Soybean	cytosol	6.22	25.36
KRH52304	Soybean	plastid	23.8	24.81
KRH61640	Soybean	plasma membrane, plastid	23.8	23.3
KRH64672	Soybean	plastid	14.21	15.09
KRH53240	Soybean	plastid	14.21	15.09
KRH18716	Soybean	golgi	14.03	14.85
KRH16353	Soybean	cytosol, golgi, plastid	14.03	14.79

Protein Annotations

Gene3D:2.102.10.10	MapMan:7.12.6.7.5	EntrezGene:778121	EMBL:ACUP02007207	EMBL:DQ154009	EnsemblPlantsGene:GLYMA_12G082100
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277
GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH25120
ProteinID:KRH25120	ProteinID:KRH25120.1	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF24	InterPro:PaO	UniProt:Q0H950	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022
SUPFAM:SSF55961	UniParc:UPI0000DD4E79	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:6503492..6508798

Molecular Weight (calculated)

63645.4 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.421

Length

563 amino acids

Sequence
(BLAST)

001: MNLSLCNSSN LNTSRKPLMA LPHSISALAT TLTLSSPTTK PQKVNPFPFF SNQKTRFLTK QTRPRSRRSL SLTPARVAAP PSTVEADQSY PETENNETEE
101: EFNDESSYSK FTWRDHWYPV SLIEDLNPLL PTPFQLLGRE IVLWYDKSIS QWVAFDDKCP HRLAPLSEGR IDEDGKLQCS YHGWSFDGCG SCVKIPQAAS
201: EGPEARAIGS PKACATRFPT MVSQGLLFVW PDENGWEKAK ASKPPMLPDD FDKPEFATVN IQRDLFYGYD TLMENVSDPS HIEFAHHKVT GRRDRAKPLP
301: FKMDSRGSWG FSGANEGNPQ ISAKFVAPCY MMNKIQIDTK LPVVGDQKWV VWICSFNVPM APGKTRSIVC SARNFFQFSV PGPAWWQVVP RWYEHWTSNK
401: VYDGDMIVLQ GQEKIFLSET KEGGDINKQY TNITFTPTQA DRFVLAFRNW LRRHGNGQPE WFGNSSDQPL PSTVLSKRQM LDRFEQHTLK CSSCKAAYEG
501: FQTWQKVLIG TTVVFCATSG IPSDVQLRVL LAGLAIVSAA ITFALNQLQK NFEFVDYVHA EID

Best Arabidopsis Sequence Match ( AT3G44880.1 )
(BLAST)

001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

Arabidopsis Description

PAOPheophorbide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.