CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29727	Canola	plastid	92.31	98.88
AT3G44880.1	Thale cress	plastid	87.24	92.92
Solyc11g066440.1.1	Tomato	plastid	67.13	71.51
VIT_06s0061g00790.t01	Wine grape	plastid	65.56	69.57
TraesCS4B01G311100.1	Wheat	golgi	63.46	69.41
HORVU4Hr1G079260.2	Barley	peroxisome	59.44	68.97
TraesCS4A01G411000.1	Wheat	plastid	64.34	68.91
PGSC0003DMT400001216	Potato	plastid	66.08	68.85
TraesCS4D01G309000.1	Wheat	mitochondrion	63.29	68.3
EER95507	Sorghum	plastid	62.41	68.13
Os03t0146400-01	Rice	plastid	62.94	68.05
KRH30552	Soybean	plastid	64.51	67.71
Zm00001d027656_P001	Maize	plastid	61.54	67.69
HORVU4Hr1G079330.1	Barley	plastid	63.29	67.54
KRH25120	Soybean	plastid	65.38	66.43
GSMUA_Achr4P25150_001	Banana	nucleus	61.01	63.11
CDX89405	Canola	plastid	26.75	28.65
CDX94430	Canola	plastid	26.75	28.6
CDY38514	Canola	plastid	10.84	26.38
CDY38515	Canola	plastid	24.13	25.51
CDY38513	Canola	plastid	24.13	25.51
CDX83228	Canola	plastid	24.13	25.51
CDY36339	Canola	plastid	13.64	14.89
CDY63862	Canola	plastid	13.46	14.5
CDY14980	Canola	plastid	13.46	14.42

Protein Annotations

Gene3D:2.102.10.10	MapMan:7.12.6.7.5	GO:A0A078G1A9	UniProt:A0A078G1A9	EnsemblPlants:CDY20340	ProteinID:CDY20340
ProteinID:CDY20340.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00012313001	InterPro:IPR017941
InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF24
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI0004EC7A08
SEG:seg	:	:	:	:	:

Description

BnaC01g24000DBnaC01g24000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1A9]

Coordinates

chrLK032106:-:279427..282006

Molecular Weight (calculated)

64317.1 Da

IEP (calculated)

7.746

GRAVY (calculated)

-0.382

Length

572 amino acids

Sequence
(BLAST)

001: MEKRKNLHAI SSSSSFFFSQ VSESSAKIIP TKEAMSVVLV SSASATLTKS KSIKIPFLSP NSAKFPSRVS ISPQRPKLLD SPLRVAAPPS VPTSDPAEES
101: RIEEEHGGDK EEEGSEFKWR DHWYPVSLVE DLDPNSPTRF QLLGRDLVLW FDRNDQKWAA FDDLCPHRLA PLSEGRLDEN GHLQCSYHGW SFAGCGSCTR
201: IPQAATSGPE ARAVKSPRAC AIKFPTMVSQ GLLFVWPDEN GWDRANSIEP PRLPDDFDKP EFSTVTIQRD LFYGYDTLME NVSDPSHIDF AHHKVTGRRD
301: RAKPLPFKVE SSGPWGFQGA NDDSPKITAK FVAPCYSLNK IEIDAKLPIV GNQKWVIWIC SFNIPMAPGK TRSIVCSARN FFQFSVPGPA WWQVVPRWYE
401: HWTSNLVYDG DMIVLQGQEK VFLSKSMESP DYDVNKQYTK LTFTPTQADR FVLSFRNWLR RYGKSQPEWF GSTAANQPLP STVLTKREML DRFEQHTQVC
501: SSCKGAYNGF QIVKKFLVGT TVLLAATAGV PSDVQIRLVL AGLALISAAS AYALHEKEKN FVFRDYVHSE IE

Best Arabidopsis Sequence Match ( AT3G44880.1 )
(BLAST)

001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

Arabidopsis Description

PAOPheophorbide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.