Factsheet for VIT_04s0008g07020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52304	Soybean	plastid	74.82	75.37
PGSC0003DMT400075266	Potato	plastid	72.98	72.31
Solyc12g096550.1.1	Tomato	plastid	72.06	71.79
KRH61640	Soybean	plasma membrane, plastid	75.55	71.48
AT2G24820.1	Thale cress	plastid	69.12	69.76
CDX83228	Canola	plastid	69.12	69.5
CDY38513	Canola	plastid	69.12	69.5
Bra000547.1-P	Field mustard	plastid	68.93	69.32
CDY38515	Canola	plastid	68.93	69.32
GSMUA_Achr7P16230_001	Banana	plastid	67.1	65.65
Os02t0792800-01	Rice	plastid	64.52	65.12
EES05942	Sorghum	plastid	63.97	64.68
TraesCS6B01G386400.1	Wheat	plastid	64.15	64.39
TraesCS6D01G336000.1	Wheat	golgi	63.97	64.21
TraesCS6A01G353700.1	Wheat	plastid	64.15	64.15
Zm00001d018358_P001	Maize	plastid	63.24	63.94
CDY38514	Canola	plastid	26.29	60.85
HORVU6Hr1G084510.1	Barley	plastid	63.6	60.81
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	21.88	25.7
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	24.63	25.62
VIT_06s0061g00790.t01	Wine grape	plastid	24.45	24.68
VIT_06s0004g00660.t01	Wine grape	cytosol	2.94	20.25
VIT_06s0004g00630.t01	Wine grape	cytosol	3.68	18.02
VIT_18s0001g02700.t01	Wine grape	cytosol	16.18	16.99

Protein Annotations

EntrezGene:100259354	wikigene:100259354	Gene3D:2.102.10.10	MapMan:23.1.3.5.2	ProteinID:CBI21171	ProteinID:CBI21171.3
UniProt:D7SV72	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0010277	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0045036	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922
EntrezGene:LOC100259354	wikigene:LOC100259354	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF29	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961
TMHMM:TMhelix	UniParc:UPI0001BE1BA2	ArrayExpress:VIT_04s0008g07020	EnsemblPlantsGene:VIT_04s0008g07020	EnsemblPlants:VIT_04s0008g07020.t01	RefSeq:XP_002283433
RefSeq:XP_002283433.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:7106673..7110300

Molecular Weight (calculated)

61618.0 Da

IEP (calculated)

8.367

GRAVY (calculated)

-0.336

Length

544 amino acids

Sequence
(BLAST)

001: MALLQPFLSH SPPLSFSLPK PTPLSLVSLS QSLKPPHKLL TQTWRDSIRC CAIAEIRDGV SLGGEDQGVL VDPSSQEEVR GERHVAEYDW KEEWYPLYLT
101: KDIPEDAPMG LTVFDKQLVL YRDGKDLLQC YEDRCPHRLA KLSEGQLVDG RLECLYHGWQ FEGEGKCVKI PQLPADAKIP RSACVKTYEV KDSQGVVWVW
201: MSHRTPPNPD KLPWFENFAR PGFRDTSTIH ELPYDHSILL ENLMDPAHVP ISHDRTDWSA KREDAQPLCF KVTERTDRGF AGWWGREKDE SLLNFLRFEA
301: PCVLQNNREI VDKNGEKHYF TGLFLCRPSG QGKSMLIVRF GSTKRSPIAK LFPEWYFHQN AGKVFEQDMG FLSSQNEILM KEKVPTKELY LNLRSSDTWV
401: AEYRRWMDKV GHGMPYHFGH STISLPQQPA VVEHAPAGLV AGLSASSPAK GGIGTMHAPN PANRYFRHVV HCKGCRSVVK AFQAWKNVFF TLALASTALA
501: ILVTGRQWKA LLLVGTALSL AGMYACSTVV AMNTTNFVRI HRRL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.