Factsheet for VIT_07s0031g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00590.t01	plastid
VIT_06s0061g00790.t01	plastid
VIT_11s0016g03890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	VIT_06s0061g00790.t01	AT3G44880.1	22366162
AT4G37000.1	VIT_06s0061g00790.t01	AT3G44880.1	22366162
AT4G37000.1	VIT_11s0016g03890.t01	AT4G13250.1	22366162
AT4G37000.1	VIT_01s0010g00590.t01	AT5G04900.1	22366162
AT4G37000.1	VIT_01s0010g00590.t01	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048861	Potato	cytosol	54.35	64.1
KRH14207	Soybean	plastid	59.01	59.01
KRH73924	Soybean	plastid	58.7	57.45
Solyc03g044470.2.1	Tomato	plastid	54.97	56.37
CDX75624	Canola	cytosol	48.14	55.16
AT4G37000.1	Thale cress	plastid	47.83	48.28
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	28.57	43.81
GSMUA_Achr9P29140_001	Banana	plastid	44.1	43.03
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.64	43.0
HORVU7Hr1G113230.1	Barley	mitochondrion	36.96	41.61
Os10t0389100-01	Rice	endoplasmic reticulum	21.12	40.24
KXG28420	Sorghum	cytosol	25.47	40.0
TraesCS6A01G006200.1	Wheat	plastid	38.2	39.3
Os10t0389200-01	Rice	plasma membrane	38.51	37.69
Zm00001d030549_P001	Maize	plastid	38.82	37.65
TraesCS6D01G009000.1	Wheat	plastid	35.71	36.62
EER91980	Sorghum	plastid	33.54	33.96
Bra011734.1-P	Field mustard	plastid	50.62	33.27
Os10t0389300-02	Rice	plastid	32.61	32.31
OQU86787	Sorghum	plastid	38.2	32.2
CDX69273	Canola	plastid	49.69	30.42
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	38.2	27.03

Protein Annotations

KEGG:00860+1.3.7.12	EntrezGene:100252439	wikigene:100252439	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	ProteinID:CBI21430
ProteinID:CBI21430.3	UniProt:D7SVY1	EMBL:FN595233	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009941	GO:GO:0009987
GO:GO:0010363	GO:GO:0015996	GO:GO:0043067	GO:GO:0051743	GO:GO:0055114	EntrezGene:LOC100252439
wikigene:LOC100252439	PFAM:PF06405	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2	InterPro:RCC_reductase	UniParc:UPI0001983AE2
ArrayExpress:VIT_07s0031g00680	EnsemblPlantsGene:VIT_07s0031g00680	EnsemblPlants:VIT_07s0031g00680.t01	unigene:Vvi.10143	RefSeq:XP_002277744	RefSeq:XP_002277744.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:16847954..16851832

Molecular Weight (calculated)

35578.7 Da

IEP (calculated)

5.591

GRAVY (calculated)

-0.136

Length

322 amino acids

Sequence
(BLAST)

001: MAVVASHFLL PPLCLPPPSS RTASHYSVSP KRPPPIMAAS SSSPSLTDPQ YGGGRSRFME FPHVSAPHRD LMVELVSAVE ARLDSYLLPC TLPPDVQYYE
101: NQSGTAQATL HVRSGHDSSP IDFVLGSWIH CQLPSGGALN ITSLSTYLNP STDAPNFLIE LIRSSPTSLV LILDLPPRKD LALHPDYLQT FYEDTKLESR
201: RQLLEKIPES QPYFSSSLYI RCIVSPTAIM TRIETEAGGV ERMEEILQSH VGPVAMEVLG IWLDQCAFGE REVGDSEISY LEKRDRLIRS KTIEIDLGSS
301: LPRLFGPETA GRVLEAMRGV FK

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.