CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95507	plastid
EES02213
KXG33129
KXG37915	plastid
OQU77869

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	EER95507	AT3G44880.1	22366162
AT4G37000.1	EER95507	AT3G44880.1	22366162
AT4G37000.1	EES02213	AT4G13250.1	22366162
AT4G37000.1	KXG33129	AT4G13250.1	22366162
AT4G37000.1	OQU77869	AT4G13250.1	22366162
AT4G37000.1	KXG37915	AT5G04900.1	22366162
AT4G37000.1	KXG37915	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91980	Sorghum	plastid	100.0	64.47
Os10t0389300-02	Rice	plastid	63.9	40.31
CDX75624	Canola	cytosol	42.44	30.96
GSMUA_Achr9P29140_001	Banana	plastid	47.32	29.39
OQU86787	Sorghum	plastid	53.66	28.8
AT4G37000.1	Thale cress	plastid	43.9	28.21
PGSC0003DMT400048861	Potato	cytosol	37.07	27.84
VIT_07s0031g00680.t01	Wine grape	plastid	40.0	25.47
Solyc03g044470.2.1	Tomato	plastid	38.05	24.84
KRH14207	Soybean	plastid	38.54	24.53
KRH73924	Soybean	plastid	39.02	24.32
Bra011734.1-P	Field mustard	plastid	42.44	17.76
CDX69273	Canola	plastid	42.93	16.73

Protein Annotations

EnsemblPlants:KXG28420	EnsemblPlantsGene:SORBI_3005G120000	Gene3D:3.40.1500.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0051743	GO:GO:0055114	InterPro:RCC_reductase	KEGG:00860+1.3.7.12	MetaCyc:PWY-5098
MetaCyc:PWY-6927	PANTHER:PTHR34685	PANTHER:PTHR34685:SF1	PFAM:PF06405	ProteinID:KXG28420	ProteinID:KXG28420.1
UniParc:UPI00081AD3B8	UniProt:A0A1B6PRY6	MapMan:7.12.6.7.6	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:52218993..52219610

Molecular Weight (calculated)

22739.5 Da

IEP (calculated)

5.298

GRAVY (calculated)

0.043

Length

205 amino acids

Sequence
(BLAST)

001: IDFMLEAWFH RALPTGGAID ITSLVVFLNG TTDAPHFLME LIQGGPSSLV VLLDLFPRRD LPVHPDYIDK YYGATSVDAH RINIEKIPQV RPYVSPSLLV
101: RSLWSPTAVV VDIQCGEQGK EAALEEIVRG QLAHSAAELL HVWLNKCAGS VEEMEETEKE ILVARDKMIS TTSVKLNLSA NLPKIFDKHV SDRVVAEIDK
201: AFRGP

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.