Factsheet for PGSC0003DMT400048861

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001216	plastid
PGSC0003DMT400033934	plastid
PGSC0003DMT400077668

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	PGSC0003DMT400001216	AT3G44880.1	22366162
AT4G37000.1	PGSC0003DMT400001216	AT3G44880.1	22366162
AT4G37000.1	PGSC0003DMT400077668	AT4G13250.1	22366162
AT4G37000.1	PGSC0003DMT400033934	AT5G04900.1	22366162
AT4G37000.1	PGSC0003DMT400033934	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044470.2.1	Tomato	plastid	96.7	84.08
VIT_07s0031g00680.t01	Wine grape	plastid	64.1	54.35
KRH14207	Soybean	plastid	61.17	51.86
KRH73924	Soybean	plastid	61.9	51.37
CDX75624	Canola	cytosol	52.01	50.53
AT4G37000.1	Thale cress	plastid	49.82	42.63
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	31.87	41.43
GSMUA_Achr9P29140_001	Banana	plastid	49.45	40.91
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.57	37.68
KXG28420	Sorghum	cytosol	27.84	37.07
HORVU7Hr1G113230.1	Barley	mitochondrion	38.83	37.06
Os10t0389100-01	Rice	endoplasmic reticulum	21.61	34.91
Os10t0389200-01	Rice	plasma membrane	40.29	33.43
Zm00001d030549_P001	Maize	plastid	40.29	33.13
TraesCS6A01G006200.1	Wheat	plastid	37.36	32.59
TraesCS6D01G009000.1	Wheat	plastid	37.36	32.48
EER91980	Sorghum	plastid	35.53	30.5
Os10t0389300-02	Rice	plastid	34.07	28.62
Bra011734.1-P	Field mustard	plastid	51.28	28.57
OQU86787	Sorghum	plastid	38.46	27.49
CDX69273	Canola	plastid	51.28	26.62
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	38.46	23.08

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009941	GO:GO:0009987
GO:GO:0010363	GO:GO:0015996	GO:GO:0043067	GO:GO:0051743	GO:GO:0055114	UniProt:M1BMY7
PFAM:PF06405	EnsemblPlantsGene:PGSC0003DMG400018987	PGSC:PGSC0003DMG400018987	EnsemblPlants:PGSC0003DMT400048861	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2
InterPro:RCC_reductase	UniParc:UPI000294F8DA	SEG:seg	:	:	:

Description

Red chlorophyll catabolite reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400018987]

Coordinates

chr3:+:8559978..8564624

Molecular Weight (calculated)

30941.0 Da

IEP (calculated)

4.938

GRAVY (calculated)

-0.178

Length

273 amino acids

Sequence
(BLAST)

001: MEHHESKFKE FPYASVPHRE LMVELVSTVE NRLGESLLPC TLPSHVQYFE NESATAHASL YVRSGNSSSQ VDFILGSWVH CNLPTGGALN ITSLSAYLRP
101: STDAPNFLIE VIRSSPTTLI LILDLPPRKD LVQHPDYLKT FYEETQLDKQ RQLLEKLPEV KPYFSSSLYI RSLVSPLAIL VSIETEPSQA IRIDEIIQDH
201: ISPVAKVMLD TWLDLCACTE RRLTDDESAD LAKRDRIIKN KTIEIDLESS FPRLFGQEVA NQVLGVLREI YNS

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.