CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95507	plastid
EES02213
KXG33129
KXG37915	plastid
OQU77869

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	EER95507	AT3G44880.1	22366162
AT4G37000.1	EER95507	AT3G44880.1	22366162
AT4G37000.1	EES02213	AT4G13250.1	22366162
AT4G37000.1	KXG33129	AT4G13250.1	22366162
AT4G37000.1	OQU77869	AT4G13250.1	22366162
AT4G37000.1	KXG37915	AT5G04900.1	22366162
AT4G37000.1	KXG37915	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28420	Sorghum	cytosol	64.47	100.0
Os10t0389300-02	Rice	plastid	59.75	58.46
GSMUA_Achr9P29140_001	Banana	plastid	41.51	40.0
OQU86787	Sorghum	plastid	47.17	39.27
CDX75624	Canola	cytosol	33.33	37.72
PGSC0003DMT400048861	Potato	cytosol	30.5	35.53
AT4G37000.1	Thale cress	plastid	34.91	34.8
VIT_07s0031g00680.t01	Wine grape	plastid	33.96	33.54
Solyc03g044470.2.1	Tomato	plastid	31.76	32.17
KRH14207	Soybean	plastid	31.13	30.75
KRH73924	Soybean	plastid	31.13	30.09
Bra011734.1-P	Field mustard	plastid	34.28	22.24
CDX69273	Canola	plastid	34.59	20.91

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	EntrezGene:8062831	UniProt:C5WTE5	EnsemblPlants:EER91980
ProteinID:EER91980	ProteinID:EER91980.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015996	GO:GO:0051743	GO:GO:0055114	PFAM:PF06405
PANTHER:PTHR34685	PANTHER:PTHR34685:SF1	MetaCyc:PWY-5098	MetaCyc:PWY-6927	InterPro:RCC_reductase	EnsemblPlantsGene:SORBI_3001G306600
unigene:Sbi.21562	UniParc:UPI0001A82538	RefSeq:XP_002464982.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:59131387..59137186

Molecular Weight (calculated)

34713.0 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.027

Length

318 amino acids

Sequence
(BLAST)

001: MATLPAPCII NSHQGRRCRR FSSPAATPHG HSTHLRRKVC AATASRREAA VARMPRLAHR EVMLELAHQM EARLGPWLLP SEVPADVACF GDAAVPGAAL
101: GSVDVHRGAP GSSIDFMLEA WFHRALPTGG AIDITSLVVF LNGTTDAPHF LMELIQGGPS SLVVLLDLFP RRDLPVHPDY IDKYYGATSV DAHRINIEKI
201: PQVRPYVSPS LLVRSLWSPT AVVVDIQCGE QGKEAALEEI VRGQLAHSAA ELLHVWLNKC AGSVEEMEET EKEILVARDK MISTTSVKLN LSANLPKIFD
301: KHVSDRVVAE IDKAFRGP

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.