Factsheet for Os10t0389300-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0227100-01
Os03t0146400-01	plastid
Os03t0654600-01	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	Os03t0146400-01	AT3G44880.1	22366162
AT4G37000.1	Os03t0146400-01	AT3G44880.1	22366162
AT4G37000.1	Os01t0227100-01	AT4G13250.1	22366162
AT4G37000.1	Os03t0654600-01	AT5G04900.1	22366162
AT4G37000.1	Os03t0654600-01	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28420	Sorghum	cytosol	40.31	63.9
EER91980	Sorghum	plastid	58.46	59.75
Os10t0389200-01	Rice	plasma membrane	49.54	48.94
Os10t0389100-01	Rice	endoplasmic reticulum	23.38	44.97
GSMUA_Achr9P29140_001	Banana	plastid	38.77	38.18
PGSC0003DMT400048861	Potato	cytosol	28.62	34.07
CDX75624	Canola	cytosol	28.92	33.45
VIT_07s0031g00680.t01	Wine grape	plastid	32.31	32.61
Solyc03g044470.2.1	Tomato	plastid	30.15	31.21
AT4G37000.1	Thale cress	plastid	30.15	30.72
KRH14207	Soybean	plastid	29.23	29.5
KRH73924	Soybean	plastid	29.54	29.18
Bra011734.1-P	Field mustard	plastid	30.77	20.41
CDX69273	Canola	plastid	30.15	18.63

Protein Annotations

KEGG:00860+1.3.7.12	EntrezGene:107277220	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	UniProt:G9I8W2	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015996
GO:GO:0051743	GO:GO:0055114	EMBL:JN604887	EnsemblPlantsGene:Os10g0389300	EnsemblPlants:Os10t0389300-02	PFAM:PF06405
PANTHER:PTHR34685	PANTHER:PTHR34685:SF1	InterPro:RCC_reductase	UniParc:UPI0001C7A5CE	RefSeq:XP_015614207.1	SEG:seg

Description

RED CHLOROPHYLL CATABOLITE REDUCTASE 2Similar to Red chlorophyll catabolite reductase (Fragment). (Os10t0389300-01);Red chlorophyll catabolite reductase (Os10t0389300-02)

Coordinates

chr10:-:12891990..12894595

Molecular Weight (calculated)

33737.8 Da

IEP (calculated)

7.913

GRAVY (calculated)

0.166

Length

325 amino acids

Sequence
(BLAST)

001: MLPAPTSCCR AAPPPSRPSC LSPAAAAAAR RRRMAAVRSA AASASRVSRE EAVARMPPLA HREVMLAVAG EAEARLGARL LPSEVPADVA WFGNAAGDAV
101: GSVDVRRGAP GSSIAFMLEA WFHRELPGGG GGAIDITALI VNLNGATDAP HLVMEFIQGG PASLIVLLDL LPRVDLPLHP SYIHRYYAAT GLDARARRRV
201: AGLVPQSRPY VSPSLLVRSL WSPAAVVADV QCGEGPGGAA ALDGIVRGEL AATAMDVLGV WLEHCAGGGG GGEMEAAERE RMVARDRKVA AAELEVNLAA
301: NLPRMFDAGV ADRVVAEIRK AFMGS

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.