CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13102	plastid
KRH25120	plastid
KRH30552	plastid
KRH39291
KRH48384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	KRH25120	AT3G44880.1	22366162
AT4G37000.1	KRH30552	AT3G44880.1	22366162
AT4G37000.1	KRH25120	AT3G44880.1	22366162
AT4G37000.1	KRH30552	AT3G44880.1	22366162
AT4G37000.1	KRH39291	AT4G13250.1	22366162
AT4G37000.1	KRH48384	AT4G13250.1	22366162
AT4G37000.1	KRH13102	AT5G04900.1	22366162
AT4G37000.1	KRH13102	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14207	Soybean	plastid	85.41	87.27
PGSC0003DMT400048861	Potato	cytosol	51.37	61.9
VIT_07s0031g00680.t01	Wine grape	plastid	57.45	58.7
CDX75624	Canola	cytosol	48.33	56.58
Solyc03g044470.2.1	Tomato	plastid	51.37	53.82
AT4G37000.1	Thale cress	plastid	49.54	51.1
GSMUA_Achr9P29140_001	Banana	plastid	44.07	43.94
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	27.96	43.81
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.14	41.55
Os10t0389100-01	Rice	endoplasmic reticulum	20.97	40.83
KXG28420	Sorghum	cytosol	24.32	39.02
HORVU7Hr1G113230.1	Barley	mitochondrion	32.83	37.76
TraesCS6D01G009000.1	Wheat	plastid	33.13	34.71
TraesCS6A01G006200.1	Wheat	plastid	32.83	34.5
Bra011734.1-P	Field mustard	plastid	50.76	34.08
Os10t0389200-01	Rice	plasma membrane	34.04	34.04
Zm00001d030549_P001	Maize	plastid	34.04	33.73
CDX69273	Canola	plastid	49.85	31.18
EER91980	Sorghum	plastid	30.09	31.13
Os10t0389300-02	Rice	plastid	29.18	29.54
OQU86787	Sorghum	plastid	33.43	28.8
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	33.74	24.4

Protein Annotations

KEGG:00860+1.3.7.12	EntrezGene:100780934	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	EMBL:ACUP02001291	EMBL:BT095576
UniProt:C6TDC0	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G301700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015996	GO:GO:0051743	GO:GO:0055114
EnsemblPlants:KRH73924	ProteinID:KRH73924	ProteinID:KRH73924.1	PFAM:PF06405	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2
MetaCyc:PWY-5098	MetaCyc:PWY-6927	InterPro:RCC_reductase	UniParc:UPI0001B15A9F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:47739224..47741518

Molecular Weight (calculated)

37002.2 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.207

Length

329 amino acids

Sequence
(BLAST)

001: MMEVMICENF RYSPLSILSS SPSPRCHLSV PSSSLRIKPS SSSSSSSSVS CSLMENQETQ RSKFMDFPFV SSAQKNLMVD LVSTLENRFH SQLLPCTLPS
101: DVQYYQSQTA TAQASLHIRP AHNDSQIDFV LGSWVHSELP TGGSLDITSL SAYLNSSTDA PNFVFEMIRS SPTMLVLILD LPPRKDLVLW PDDLKTFYED
201: TQLDKHRQAL DRVPEVQPYF SSSLYIRTVS SPTAIMVRIL TENGGVERME EIIRDHLDPI SKQVLGIWLD HCACAKRQVG EAERAYLKKR DGLIRNKTIE
301: IDLGSSFPRL FGPEVANRVL DAIKEYFTV

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.