Factsheet for TraesCS6B01G011700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G151900.1
TraesCS3B01G179100.1
TraesCS3D01G159800.1
TraesCS4A01G261200.1	plastid
TraesCS4A01G299400.1	plastid
TraesCS4A01G411000.1	plastid
TraesCS4B01G311100.1	plastid
TraesCS4D01G012100.1	plastid
TraesCS4D01G053400.2	plastid
TraesCS4D01G309000.1	plastid
TraesCS6B01G357800.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	TraesCS4A01G411000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4B01G311100.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4D01G309000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4A01G411000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4B01G311100.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4D01G309000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS3A01G151900.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS3B01G179100.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS3D01G159800.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G37000.1	TraesCS6B01G357800.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G37000.1	TraesCS6B01G357800.1	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.24	86.47
Os10t0389100-01	Rice	endoplasmic reticulum	51.43	63.91
Os10t0389200-01	Rice	plasma membrane	72.86	46.5
Zm00001d030549_P001	Maize	plastid	69.52	43.98
OQU86787	Sorghum	plastid	69.05	37.96
CDX75624	Canola	cytosol	44.29	33.1
PGSC0003DMT400048861	Potato	cytosol	41.43	31.87
GSMUA_Achr9P29140_001	Banana	plastid	47.62	30.3
AT4G37000.1	Thale cress	plastid	44.76	29.47
VIT_07s0031g00680.t01	Wine grape	plastid	43.81	28.57
KRH14207	Soybean	plastid	43.33	28.26
Solyc03g044470.2.1	Tomato	plastid	41.9	28.03
KRH73924	Soybean	plastid	43.81	27.96
Bra011734.1-P	Field mustard	plastid	43.33	18.57
CDX69273	Canola	plastid	43.81	17.49

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009941	GO:GO:0009987
GO:GO:0010363	GO:GO:0015996	GO:GO:0043067	GO:GO:0051743	PFAM:PF06405	PANTHER:PTHR34685
InterPro:RCC_reductase	EnsemblPlantsGene:TraesCS6B01G011700	EnsemblPlants:TraesCS6B01G011700.1	:	:	:

Description

No Description!

Coordinates

chr6B:-:6833607..6834239

Molecular Weight (calculated)

23602.7 Da

IEP (calculated)

5.786

GRAVY (calculated)

0.024

Length

210 amino acids

Sequence
(BLAST)

001: MFIISCLQID FMLHSSLHCK VPNGAIDITS VLIFLNALTD APHFLMEFIQ GSPTSMVVIL DLLPRKDLAL HPEYLHKYYE HTHLDKQREK IEELPQTRPY
101: RSPSLYVRSA VSVTIDCGQG GEGTLEEIVC GHLASAVKEV LQTWLHSCAC DTSKMVEAER EIMIKRDQAV RLKSIEVDLT ANLPRMFGPD VSGQIIAEIR
201: QAFGVQLQEA

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.