Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G151900.1 | |
| TraesCS3B01G179100.1 | |
| TraesCS3D01G159800.1 | |
| TraesCS4A01G261200.1 | plastid |
| TraesCS4A01G299400.1 | plastid |
| TraesCS4A01G411000.1 | plastid |
| TraesCS4B01G311100.1 | plastid |
| TraesCS4D01G012100.1 | plastid |
| TraesCS4D01G053400.2 | plastid |
| TraesCS4D01G309000.1 | plastid |
| TraesCS6B01G357800.1 | plastid |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G011700.1 | Wheat | cytosol, extracellular | 86.47 | 85.24 |
| Os10t0389100-01 | Rice | endoplasmic reticulum | 49.76 | 60.95 |
| TraesCS6D01G009000.1 | Wheat | plastid | 91.3 | 60.19 |
| Os10t0389200-01 | Rice | plasma membrane | 71.01 | 44.68 |
| Zm00001d030549_P001 | Maize | plastid | 69.08 | 43.07 |
| OQU86787 | Sorghum | plastid | 70.05 | 37.96 |
| TraesCS7D01G492300.1 | Wheat | cytosol, nucleus, plastid | 73.91 | 33.63 |
| GSMUA_Achr9P29140_001 | Banana | plastid | 49.76 | 31.21 |
| CDX75624 | Canola | cytosol | 40.58 | 29.89 |
| PGSC0003DMT400048861 | Potato | cytosol | 37.68 | 28.57 |
| VIT_07s0031g00680.t01 | Wine grape | plastid | 43.0 | 27.64 |
| KRH14207 | Soybean | plastid | 41.55 | 26.71 |
| AT4G37000.1 | Thale cress | plastid | 41.06 | 26.65 |
| KRH73924 | Soybean | plastid | 41.55 | 26.14 |
| Solyc03g044470.2.1 | Tomato | plastid | 38.16 | 25.16 |
| Bra011734.1-P | Field mustard | plastid | 39.61 | 16.73 |
| CDX69273 | Canola | plastid | 40.1 | 15.78 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G008800.1 | EnsemblPlantsGene:TraesCS6D01G008800 | Gene3D:3.40.1500.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0051743 |
| InterPro:RCC_reductase | KEGG:00860+1.3.7.12 | ncoils:Coil | PANTHER:PTHR34685 | PFAM:PF06405 | MapMan:7.12.6.7.6 |
Description
No Description!
Coordinates
chr6D:-:3475640..3476263
Molecular Weight (calculated)
22861.7 Da
IEP (calculated)
5.290
GRAVY (calculated)
-0.066
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHSSLHCKV PNGAIDITXX XLVLIFLNAL TDAPHYLMEF IQGTPTPMVV ILDLLPREDL ALHPEYLHKY YEHTHLDNQR EKIEELPQTR PYRSSSLFVR
101: SACSPTAVSV TINCGQGGEG TMEEIVCGQL ASVVKEVLRI WLHTCAGDTS EMEEAEREIM IKRDQAVRLK SIEVDLTANL PRMFGPDVSG HIIAEIRKAF
201: GVQLQEA
101: SACSPTAVSV TINCGQGGEG TMEEIVCGQL ASVVKEVLRI WLHTCAGDTS EMEEAEREIM IKRDQAVRLK SIEVDLTANL PRMFGPDVSG HIIAEIRKAF
201: GVQLQEA
001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL
Arabidopsis Description
RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.