Factsheet for Zm00001d030549_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013651_P001	plastid
Zm00001d027656_P001	plastid
Zm00001d039312_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	Zm00001d027656_P001	AT3G44880.1	22366162
AT4G37000.1	Zm00001d027656_P001	AT3G44880.1	22366162
AT4G37000.1	Zm00001d039312_P001	AT4G13250.1	22366162
AT4G37000.1	Zm00001d013651_P001	AT5G04900.1	22366162
AT4G37000.1	Zm00001d013651_P001	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86787	Sorghum	plastid	85.54	74.35
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	43.98	69.52
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.07	69.08
HORVU7Hr1G113230.1	Barley	mitochondrion	58.43	67.83
Os10t0389200-01	Rice	plasma membrane	63.86	64.44
Os10t0389100-01	Rice	endoplasmic reticulum	32.23	63.31
TraesCS6A01G006200.1	Wheat	plastid	58.13	61.66
TraesCS6D01G009000.1	Wheat	plastid	58.13	61.47
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	61.75	45.05
CDX75624	Canola	cytosol	35.24	41.64
PGSC0003DMT400048861	Potato	cytosol	33.13	40.29
GSMUA_Achr9P29140_001	Banana	plastid	39.76	40.0
AT4G37000.1	Thale cress	plastid	37.35	38.87
VIT_07s0031g00680.t01	Wine grape	plastid	37.65	38.82
Solyc03g044470.2.1	Tomato	plastid	33.73	35.67
KRH14207	Soybean	plastid	33.43	34.47
KRH73924	Soybean	plastid	33.73	34.04
Bra011734.1-P	Field mustard	plastid	36.45	24.69
CDX69273	Canola	plastid	36.14	22.81

Protein Annotations

KEGG:00860+1.3.7.12	EntrezGene:100272914	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	UniProt:B4FRM5	EMBL:BT039763
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009605	GO:GO:0009607
GO:GO:0009814	GO:GO:0009941	GO:GO:0009987	GO:GO:0010363	GO:GO:0015996	GO:GO:0043067
GO:GO:0051743	GO:GO:0055114	ProteinID:ONM01085.1	PFAM:PF06405	PANTHER:PTHR34685	InterPro:RCC_reductase
UniParc:UPI00017B75DA	EnsemblPlantsGene:Zm00001d030549	EnsemblPlants:Zm00001d030549_P001	EnsemblPlants:Zm00001d030549_T001	SEG:seg	:

Description

Red chlorophyll catabolite reductase chloroplastic

Coordinates

chr1:-:143230400..143232667

Molecular Weight (calculated)

36428.9 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.135

Length

332 amino acids

Sequence
(BLAST)

001: MLRLEQYLRL LPATSHATAP ALISGYSFLS SPLPRLSALR LARSRPPPLR GKTSSPVRAS AEPDSTVKRA PEMAQREVAR VVADQAVARL GARLLPSAVP
101: ADVVEFRNAA GNAVGSLDVQ RGSPGSSIDF MLQSSLHCEV PNGAIDITSI LIFLNASTDA PHFLLELIQG SSTSMVVILD LLPRKDLAFH PDYLQKYYEE
201: TGMDEQRRKI EELPQARPYR SPSLFVRSAC SPTAIMVSID CGQGGEKALE EIIHGQLAKV IQEALQTWLD NCVDSTIEMD EAERDCLLKR DRIVRSKSIE
301: VDLTANLPRM FGPDVSSRVI TEIRKAFGVQ EP

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.