CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80928	plastid
CDY01120
CDY11316	plastid
CDY20340	plastid
CDY29727	plastid
CDY43444	plastid
CDY47326
CDY67729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	CDY20340	AT3G44880.1	22366162
AT4G37000.1	CDY29727	AT3G44880.1	22366162
AT4G37000.1	CDY20340	AT3G44880.1	22366162
AT4G37000.1	CDY29727	AT3G44880.1	22366162
AT4G37000.1	CDY01120	AT4G13250.1	22366162
AT4G37000.1	CDY47326	AT4G13250.1	22366162
AT4G37000.1	CDY67729	AT4G13250.1	22366162
AT4G37000.1	CDX80928	AT5G04900.1	22366162
AT4G37000.1	CDY11316	AT5G04900.1	22366162
AT4G37000.1	CDY43444	AT5G04900.1	22366162
AT4G37000.1	CDX80928	AT5G04900.1	22366162
AT4G37000.1	CDY11316	AT5G04900.1	22366162
AT4G37000.1	CDY43444	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G37000.1	Thale cress	plastid	83.27	73.35
Bra011734.1-P	Field mustard	plastid	95.37	54.69
PGSC0003DMT400048861	Potato	cytosol	50.53	52.01
CDX69273	Canola	plastid	95.37	50.95
KRH14207	Soybean	plastid	55.87	48.76
KRH73924	Soybean	plastid	56.58	48.33
VIT_07s0031g00680.t01	Wine grape	plastid	55.16	48.14
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	33.1	44.29
Solyc03g044470.2.1	Tomato	plastid	49.47	44.27
KXG28420	Sorghum	cytosol	30.96	42.44
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.89	40.58
HORVU7Hr1G113230.1	Barley	mitochondrion	40.93	40.21
Os10t0389100-01	Rice	endoplasmic reticulum	23.13	38.46
TraesCS6A01G006200.1	Wheat	plastid	41.99	37.7
TraesCS6D01G009000.1	Wheat	plastid	41.64	37.26
GSMUA_Achr9P29140_001	Banana	plastid	43.06	36.67
Zm00001d030549_P001	Maize	plastid	41.64	35.24
Os10t0389200-01	Rice	plasma membrane	40.57	34.65
EER91980	Sorghum	plastid	37.72	33.33
OQU86787	Sorghum	plastid	41.99	30.89
Os10t0389300-02	Rice	plastid	33.45	28.92
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	41.64	25.71

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	EnsemblPlants:CDX75624	ProteinID:CDX75624	ProteinID:CDX75624.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0051743	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00121537001	PFAM:PF06405	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2	InterPro:RCC_reductase	UniPathway:UPA00674
UniParc:UPI0004EF3151	SEG:seg	:	:	:	:

Description

BnaA01g00780D

Coordinates

chrLK031804:-:1955906..1957046

Molecular Weight (calculated)

32126.4 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.372

Length

281 amino acids

Sequence
(BLAST)

001: MENQTDLLLR QKFMEFPYVS PTRRELMVDL MSTLEDRLHS QLLPCTLPPD VRNFKNPNGS AEASLHIRSG EQSSPIDFVI GSWIHVKIPT GVSLNITSIS
101: AFLNSSTEAP NFVVELIQSS PTSLVLILDL PHRKDLVRHP DYLQTFYQDT ALDTHRQSLL KLPEIKPYDS PSLFVRSAFS PTASMLKIDA EEGERLEEIL
201: RDHVSPAAKQ VLEVWLERCA REEEGEKRVV GEEEKLELER RDKSFRKKSI EEDLDLQFPR MFGDEVSSRV IHAIKEAFGV L

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.