Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45402 | Canola | cytosol, golgi, peroxisome | 96.61 | 92.93 |
| Bra015885.1-P | Field mustard | cytosol, golgi, peroxisome | 96.61 | 92.43 |
| AT1G74890.1 | Thale cress | nucleus | 82.49 | 70.87 |
| CDX68161 | Canola | cytosol | 77.4 | 69.54 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 81.36 | 66.06 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 63.84 | 63.13 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 64.41 | 62.3 |
| CDY41014 | Canola | nucleus | 75.14 | 62.15 |
| CDY26701 | Canola | nucleus | 74.58 | 61.97 |
| CDY36905 | Canola | nucleus | 63.84 | 61.75 |
| CDY70164 | Canola | nucleus | 63.84 | 61.75 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 63.28 | 61.2 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 63.28 | 60.87 |
| CDX96681 | Canola | cytosol | 70.62 | 60.39 |
| CDX83788 | Canola | cytosol | 71.19 | 59.43 |
| Solyc03g113720.2.1 | Tomato | nucleus | 61.58 | 55.9 |
| PGSC0003DMT400063187 | Potato | cytosol | 61.58 | 54.5 |
| CDY59626 | Canola | cytosol | 38.42 | 53.54 |
| CDY71200 | Canola | cytosol | 38.42 | 53.54 |
| CDX72141 | Canola | cytosol | 38.42 | 53.54 |
| KRH03376 | Soybean | nucleus | 62.15 | 53.14 |
| CDX75990 | Canola | cytosol | 37.85 | 52.76 |
| CDY00336 | Canola | nucleus | 56.5 | 52.63 |
| CDX84366 | Canola | nucleus | 56.5 | 52.63 |
| KRH63457 | Soybean | cytosol | 59.89 | 51.96 |
| KRH57009 | Soybean | nucleus | 61.58 | 51.66 |
| CDY35445 | Canola | cytosol | 46.89 | 51.55 |
| KRH54462 | Soybean | cytosol | 59.32 | 51.47 |
| CDY22469 | Canola | cytosol | 45.76 | 51.27 |
| CDY65526 | Canola | cytosol | 43.5 | 48.73 |
| CDY27219 | Canola | cytosol, nucleus, plastid | 44.07 | 46.15 |
| VIT_17s0000g07580.t01 | Wine grape | cytosol, nucleus, plastid | 61.02 | 41.86 |
| CDY45155 | Canola | nucleus | 53.67 | 41.67 |
| CDY30913 | Canola | nucleus | 53.67 | 39.92 |
| CDX79942 | Canola | nucleus | 48.02 | 39.53 |
| CDY23856 | Canola | nucleus | 47.46 | 39.07 |
| CDY20630 | Canola | nucleus | 54.24 | 38.87 |
| CDY20948 | Canola | nucleus | 54.24 | 37.94 |
| CDX93424 | Canola | nucleus | 54.24 | 37.94 |
| CDY37975 | Canola | nucleus | 53.67 | 37.55 |
| CDY22518 | Canola | nucleus | 45.76 | 37.33 |
| CDY34890 | Canola | nucleus | 54.8 | 37.31 |
| CDY35419 | Canola | nucleus | 45.2 | 37.04 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 46.33 | 36.94 |
| CDY66046 | Canola | nucleus | 52.54 | 36.76 |
| CDY07801 | Canola | nucleus | 54.8 | 36.6 |
| CDY06934 | Canola | cytosol | 45.76 | 36.49 |
| CDY06142 | Canola | cytosol | 46.89 | 35.17 |
| CDX72077 | Canola | cytosol | 46.33 | 34.89 |
| CDX76036 | Canola | nucleus | 44.07 | 34.67 |
| CDX67674 | Canola | cytosol | 45.76 | 34.62 |
| CDY30966 | Canola | cytosol | 43.5 | 33.19 |
Protein Annotations
| MapMan:11.4.2.5 | Gene3D:3.40.50.2300 | GO:A0A078C8F9 | EnsemblPlants:CDX73122 | ProteinID:CDX73122 | ProteinID:CDX73122.1 |
| InterPro:CheY-like_superfamily | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00103592001 | InterPro:IPR001789 | PFAM:PF00072 | PFscan:PS50110 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF17 |
| SMART:SM00448 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver | TMHMM:TMhelix | UniParc:UPI0004EF2036 | SEG:seg |
Description
BnaC06g35700D
Coordinates
chrLK031797:-:2214138..2215586
Molecular Weight (calculated)
19707.4 Da
IEP (calculated)
8.197
GRAVY (calculated)
0.215
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGDLSSSS TSELHVLAVD DSIVDRKVIE RLLRISACKV TTVESGTRAL QYLGLDGDKG SSGLKDLKVN LIVTDYSMPG LTGYELLKKI KESSAFREIP
101: VVIMSSENIQ PRIEQCMTEG AEDFLLKSVK LADVKRLKEL IMREKTSNLI SPKRILQNNI FFFIITITIT IIVIFIV
101: VVIMSSENIQ PRIEQCMTEG AEDFLLKSVK LADVKRLKEL IMREKTSNLI SPKRILQNNI FFFIITITIT IIVIFIV
001: MALRDLSSSL SSSSSPELHV LAVDDSFVDR KVIERLLKIS ACKVTTVESG TRALQYLGLD GDNGSSGLKD LKVNLIVTDY SMPGLTGYEL LKKIKESSAL
101: REIPVVIMSS ENIQPRIEQC MIEGAEEFLL KPVKLADVKR LKELIMRGGE AEEGKTKKLS PKRILQNDID SSPSSSSTSS SSSSHDVSSL DDDTPSSKRI
201: KLESRG
101: REIPVVIMSS ENIQPRIEQC MIEGAEEFLL KPVKLADVKR LKELIMRGGE AEEGKTKKLS PKRILQNDID SSPSSSSTSS SSSSHDVSSL DDDTPSSKRI
201: KLESRG
Arabidopsis Description
ARR15Two-component response regulator ARR15 [Source:UniProtKB/Swiss-Prot;Acc:Q7G8V2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.