Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010132.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY00336 | Canola | nucleus | 100.0 | 100.0 |
| AT5G62920.1 | Thale cress | cytosol | 85.79 | 87.63 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 73.68 | 76.09 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 72.63 | 75.41 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 72.63 | 75.41 |
| CDY36905 | Canola | nucleus | 71.58 | 74.32 |
| CDY70164 | Canola | nucleus | 71.58 | 74.32 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 69.47 | 73.74 |
| CDX96681 | Canola | cytosol | 61.58 | 56.52 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 52.63 | 56.5 |
| CDX83788 | Canola | cytosol | 62.11 | 55.66 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 53.68 | 55.43 |
| Solyc03g113720.2.1 | Tomato | nucleus | 56.84 | 55.38 |
| CDX68161 | Canola | cytosol | 56.84 | 54.82 |
| KRH03376 | Soybean | nucleus | 58.95 | 54.11 |
| KRH63457 | Soybean | cytosol | 57.89 | 53.92 |
| KRH57009 | Soybean | nucleus | 59.47 | 53.55 |
| CDY41014 | Canola | nucleus | 60.0 | 53.27 |
| PGSC0003DMT400063187 | Potato | cytosol | 55.79 | 53.0 |
| KRH54462 | Soybean | cytosol | 56.84 | 52.94 |
| CDY26701 | Canola | nucleus | 58.95 | 52.58 |
| CDX72141 | Canola | cytosol | 33.68 | 50.39 |
| CDY22469 | Canola | cytosol | 41.58 | 50.0 |
| CDY71200 | Canola | cytosol | 33.16 | 49.61 |
| CDY59626 | Canola | cytosol | 33.16 | 49.61 |
| CDY65526 | Canola | cytosol | 41.05 | 49.37 |
| CDY35445 | Canola | cytosol | 41.58 | 49.07 |
| CDX75990 | Canola | cytosol | 32.63 | 48.82 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 54.74 | 47.71 |
| CDY45155 | Canola | nucleus | 55.26 | 46.05 |
| VIT_17s0000g07580.t01 | Wine grape | cytosol, nucleus, plastid | 60.53 | 44.57 |
| CDY27219 | Canola | cytosol, nucleus, plastid | 39.47 | 44.38 |
| CDY30913 | Canola | nucleus | 55.26 | 44.12 |
| CDY20630 | Canola | nucleus | 54.21 | 41.7 |
| CDY37975 | Canola | nucleus | 55.26 | 41.5 |
| CDX93424 | Canola | nucleus | 55.26 | 41.5 |
| CDY20948 | Canola | nucleus | 55.26 | 41.5 |
| CDY23856 | Canola | nucleus | 46.32 | 40.93 |
| CDY66046 | Canola | nucleus | 54.21 | 40.71 |
| CDX79942 | Canola | nucleus | 45.79 | 40.47 |
| CDY34890 | Canola | nucleus | 55.26 | 40.38 |
| CDY22518 | Canola | nucleus | 45.79 | 40.09 |
| CDY35419 | Canola | nucleus | 45.26 | 39.81 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 46.32 | 39.64 |
| CDY07801 | Canola | nucleus | 54.74 | 39.25 |
| CDY06934 | Canola | cytosol | 45.79 | 39.19 |
| CDX76036 | Canola | nucleus | 42.63 | 36.0 |
| CDX67674 | Canola | cytosol | 44.21 | 35.9 |
| CDY06142 | Canola | cytosol | 44.21 | 35.59 |
| CDX72077 | Canola | cytosol | 43.68 | 35.32 |
| CDY30966 | Canola | cytosol | 42.63 | 34.91 |
Protein Annotations
| EnsemblPlants:CDX84366 | EnsemblPlantsGene:GSBRNA2T00141512001 | Gene3D:3.40.50.2300 | GO:A0A078EGT7 | GO:GO:0000160 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:CheY-like_superfamily | InterPro:IPR001789 | InterPro:Sig_transdc_resp-reg_receiver |
| PANTHER:PTHR43874 | PANTHER:PTHR43874:SF17 | PFAM:PF00072 | PFscan:PS50110 | ProteinID:CDX84366 | ProteinID:CDX84366.1 |
| SMART:SM00448 | SUPFAM:SSF52172 | UniParc:UPI000253F765 | MapMan:11.4.2.5 | : | : |
Description
BnaC03g51340D
Coordinates
chrLK031837:-:356029..357774
Molecular Weight (calculated)
21551.4 Da
IEP (calculated)
6.539
GRAVY (calculated)
-0.176
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVMLPMKM EMANDPSKFT SPDLLHVLAV DDSHVDRKFI ERLLKVSSCK VTVVDSATRA LQYLGLDVNE KPIGCKDLKV NLIMTDYSMP GMTGYELLKK
101: IKESSAFRDV PVVVMSSENI LPRIDRCLEE GAEDFLLKPV KLSDVRRIRD SLIKVEDLSF TKSINKRELE TENVYSLDSS VPLQLKRTKI
101: IKESSAFRDV PVVVMSSENI LPRIDRCLEE GAEDFLLKPV KLSDVRRIRD SLIKVEDLSF TKSINKRELE TENVYSLDSS VPLQLKRTKI
001: MAEVMLPRKM EILNHSSKFG SPDPLHVLAV DDSHVDRKFI ERLLRVSSCK VTVVDSATRA LQYLGLDVEE KSVGFEDLKV NLIMTDYSMP GMTGYELLKK
101: IKESSAFREV PVVIMSSENI LPRIDRCLEE GAEDFLLKPV KLSDVKRLRD SLMKVEDLSF TKSIQKRELE TENVYPVHSQ LKRAKI
101: IKESSAFREV PVVIMSSENI LPRIDRCLEE GAEDFLLKPV KLSDVKRLRD SLMKVEDLSF TKSIQKRELE TENVYPVHSQ LKRAKI
Arabidopsis Description
ARR6Response regulator 6 [Source:UniProtKB/TrEMBL;Acc:Q0WSS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.