Factsheet for Bra010132.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009997.1-P
Bra020610.1-P
Bra024402.1-P
Bra033666.1-P
Bra036134.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62920.1	Bra009997.1-P	AT5G28490.1	18642946
AT5G62920.1	Bra020610.1-P	AT5G28490.1	18642946
AT5G62920.1	Bra036134.1-P	AT5G28490.1	18642946
AT5G62920.1	Bra033666.1-P	AT5G43170.1	18642946
AT5G62920.1	Bra024402.1-P	AT5G65630.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00336	Canola	nucleus	100.0	100.0
CDX84366	Canola	nucleus	100.0	100.0
AT5G62920.1	Thale cress	cytosol	85.79	87.63
Bra033773.1-P	Field mustard	nucleus	71.05	75.0
Bra018084.1-P	Field mustard	cytosol, nucleus, plastid	69.47	73.74
Bra019524.1-P	Field mustard	cytosol	49.47	70.15
Bra016526.1-P	Field mustard	cytosol	61.58	56.52
Solyc03g113720.2.1	Tomato	nucleus	56.84	55.38
Bra015885.1-P	Field mustard	cytosol, golgi, peroxisome	53.68	55.14
Bra003782.1-P	Field mustard	cytosol	56.84	54.82
KRH03376	Soybean	nucleus	58.95	54.11
KRH63457	Soybean	cytosol	57.89	53.92
KRH57009	Soybean	nucleus	59.47	53.55
PGSC0003DMT400063187	Potato	cytosol	55.79	53.0
KRH54462	Soybean	cytosol	56.84	52.94
Bra025708.1-P	Field mustard	nucleus	58.95	52.58
Bra014695.1-P	Field mustard	cytosol	33.16	49.61
Bra000199.1-P	Field mustard	cytosol	41.58	49.07
Bra027829.1-P	Field mustard	nucleus	55.26	46.46
VIT_17s0000g07580.t01	Wine grape	cytosol, nucleus, plastid	60.53	44.57
Bra007242.1-P	Field mustard	cytosol, nucleus, plastid	39.47	44.38
Bra018439.1-P	Field mustard	nucleus	55.26	41.83
Bra019932.1-P	Field mustard	nucleus	55.26	41.5
Bra031714.1-P	Field mustard	nucleus	55.26	40.23
Bra036963.1-P	Field mustard	nucleus	55.26	40.23
Bra004615.1-P	Field mustard	nucleus	45.26	40.19
Bra000224.1-P	Field mustard	nucleus	45.26	39.81
Bra016943.1-P	Field mustard	cytosol	45.79	39.19
Bra007295.1-P	Field mustard	cytosol	44.21	35.59
Bra003265.1-P	Field mustard	cytosol	44.21	35.0
Bra014649.1-P	Field mustard	nucleus	42.63	34.62

Protein Annotations

MapMan:11.4.2.5	Gene3D:3.40.50.2300	EnsemblPlantsGene:Bra010132	EnsemblPlants:Bra010132.1	EnsemblPlants:Bra010132.1-P	InterPro:CheY-like_superfamily
GO:GO:0000160	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009735	GO:GO:0009736	GO:GO:0009987
InterPro:IPR001789	UniProt:M4D0Y3	PFAM:PF00072	PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF17
SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000253F765	:	:

Description

AT5G62920 (E=1e-084) ARR6 | ARR6 (RESPONSE REGULATOR 6); transcription regulator/ two-component response regulator

Coordinates

chrA06:-:19614591..19616039

Molecular Weight (calculated)

21551.4 Da

IEP (calculated)

6.539

GRAVY (calculated)

-0.176

Length

190 amino acids

Sequence
(BLAST)

001: MAEVMLPMKM EMANDPSKFT SPDLLHVLAV DDSHVDRKFI ERLLKVSSCK VTVVDSATRA LQYLGLDVNE KPIGCKDLKV NLIMTDYSMP GMTGYELLKK
101: IKESSAFRDV PVVVMSSENI LPRIDRCLEE GAEDFLLKPV KLSDVRRIRD SLIKVEDLSF TKSINKRELE TENVYSLDSS VPLQLKRTKI

Best Arabidopsis Sequence Match ( AT5G62920.1 )
(BLAST)

001: MAEVMLPRKM EILNHSSKFG SPDPLHVLAV DDSHVDRKFI ERLLRVSSCK VTVVDSATRA LQYLGLDVEE KSVGFEDLKV NLIMTDYSMP GMTGYELLKK
101: IKESSAFREV PVVIMSSENI LPRIDRCLEE GAEDFLLKPV KLSDVKRLRD SLMKVEDLSF TKSIQKRELE TENVYPVHSQ LKRAKI

Arabidopsis Description

ARR6Response regulator 6 [Source:UniProtKB/TrEMBL;Acc:Q0WSS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.