Factsheet for Bra024402.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010132.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65630.1	Bra010132.1-P	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08771	Canola	nucleus	63.49	97.74
CDY65645	Canola	nucleus, plastid	86.97	93.12
AT5G65630.1	Thale cress	nucleus	82.57	76.27
Bra006068.1-P	Field mustard	nucleus	64.4	63.93
Bra005311.1-P	Field mustard	cytosol, plastid	22.02	51.5
KRH10646	Soybean	nucleus	44.04	45.37
KRH10648	Soybean	nucleus	44.22	44.96
VIT_03s0097g00570.t01	Wine grape	nucleus	45.32	44.75
KRH21702	Soybean	nucleus	43.3	44.44
GSMUA_Achr3P00480_001	Banana	nucleus	38.72	40.42
GSMUA_Achr1P15650_001	Banana	nucleus	35.6	39.43
PGSC0003DMT400078795	Potato	nucleus	42.57	39.19
OQU82367	Sorghum	nucleus	21.47	38.74
Os04t0622800-00	Rice	cytosol	21.65	37.94
Solyc02g091660.2.1	Tomato	nucleus	36.88	37.57
Bra008074.1-P	Field mustard	nucleus, plastid	26.05	36.22
Zm00001d002267_P001	Maize	plastid	29.72	35.92
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	29.91	35.75
Zm00001d046528_P001	Maize	cytosol	9.72	35.33
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	30.09	35.12
TraesCS2B01G489500.1	Wheat	plastid	29.54	34.77
Os08t0192800-01	Rice	nucleus	30.46	34.51
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.72	34.47
Bra025948.1-P	Field mustard	mitochondrion	25.69	33.82
Zm00001d049400_P001	Maize	plastid	29.72	33.47
Bra016586.1-P	Field mustard	nucleus, plastid	26.61	32.95
KXG24660	Sorghum	plastid	29.72	32.93
Zm00001d026333_P001	Maize	cytosol	28.26	32.7
Zm00001d024251_P001	Maize	cytosol	28.26	31.62
Bra038624.1-P	Field mustard	nucleus	13.76	30.99
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.18	30.99
Bra032431.1-P	Field mustard	nucleus	29.72	24.66
Bra030643.1-P	Field mustard	nucleus	29.91	22.06
Bra015485.1-P	Field mustard	nucleus	29.17	21.23
Bra005383.1-P	Field mustard	nucleus	13.03	18.44
Bra025262.1-P	Field mustard	nucleus	17.98	18.11
Bra012810.1-P	Field mustard	cytosol	11.74	17.98
Bra022044.1-P	Field mustard	nucleus	16.88	17.52
Bra039088.1-P	Field mustard	nucleus	20.73	17.36
Bra034451.1-P	Field mustard	cytosol	12.66	13.07
Bra035848.1-P	Field mustard	nucleus	20.55	9.4

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EnsemblPlantsGene:Bra024402	EnsemblPlants:Bra024402.1	EnsemblPlants:Bra024402.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0009294	GO:GO:0009987	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	UniProt:M4E6J8	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000253F572	SEG:seg	:	:

Description

AT5G10550 (E=5e-147) GTE2 | GTE2 (Global transcription factor group E 2); DNA binding

Coordinates

chrA06:-:15526300..15528130

Molecular Weight (calculated)

59982.9 Da

IEP (calculated)

7.655

GRAVY (calculated)

-0.640

Length

545 amino acids

Sequence
(BLAST)

001: MAPAVLSTLN EPSFHGQCGA VFMRKFTKQS VAENSTTPLP PLFTPNPNFD SSNPSNYGGY ATFNLAGYNS SQLRELKKRF TSELEQIRIL RERIESGTFE
101: SQQVRVESKK QKPKKRCNPF ASEETPSNPE SERVLAAMLN TCGQMLVKLM KHKWAWVFNT PVDVVGLGLH DYHLIVKKPM DLGTVKLNLE KGFYISPLDF
201: ATDVRLTFRN AMAYNPKGQD VYFMAEKLLH QFDVMFNPAF KKFEAQLVKL TGSTSRSEPV VKQRQWSQSP VEANVRRGTE QISIAKKLDS VKPLQPTLSP
301: PQVVEPPRER TPSPSPPPAV QPQPQPVSEV EAPPDVSEVT KGRKGKLPKP KAKDPNKRLM TMEEKSKLGM NLQDLPPEKL GQLVQILRKR NGHLAQDGDE
401: IELDIEAVDN ETLWELDRFV TNYKKMASKI KRQGFIHNVS TPPAARHMAS EAEMGSAEKR TRKGDAGEED VDIGEDIPIE DYPSVEIERD GTAVAVAASS
501: GSSSSGSSSS SSGSSSSDSG SGGSSSGSDS DADSVQSPFV EAKEA

Best Arabidopsis Sequence Match ( AT5G65630.1 )
(BLAST)

001: MAPAVFATLN EPSYQEQCGA VFMRKFTNQS VTENTNNLPL FNPNPNPNFE RSNSSKQCDD SSEFGSYATF NLAGYTSSQL RELKKRFTSE LKQIRILRER
101: IESGTFETQQ GYTIPEVPAV RSAPLNNFTG EKNDLGPKKK KQKKNVSGLK RSNQFGPSDP ESEKLLAGML NTCSQILVKL MKHKWAWVFN TPVDVVGLGL
201: HDYHQVVKKP MDLGTVKLNL DKGFYVSPID FATDVRLTFD NAMTYNPKGQ DVYFMADKLL DHFDGMFNPA FKKFEAQQLK LTGSSSRPEP DFKPDFKQRQ
301: WNQNPPMVAN PRKGTEQISI AKKLDSVKPP QPTLPPQLVE PSRVQSPSPP PPPPVIQPEL PQPQPPPPQL EIEVEAPPDV SEVSKGRKGK LPKPKAKDPN
401: KRLMTMEEKS KLGMNLQDLP PEKLGQLLQI LRKRNGHLAQ DGDEIELDIE AVDNETLWEL DRFVTNYKKM ASKIKRQGFI RNVSTPPRNM ASVAEMGSAE
501: KRTRRGDAGE EDVDIGEDIP IEDYPSVEIE RDGTAVAAAA SSGSSSSGSS SSSGGSSSSS DSGSGGSSSG SDSDADSVQS PFVEAKEAQC

Arabidopsis Description

GTE7Transcription factor GTE7 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y214]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.