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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15568 Canola nucleus 42.76 99.68
CDX86532 Canola nucleus 89.17 93.48
Bra032431.1-P Field mustard nucleus 72.26 81.28
Bra015485.1-P Field mustard nucleus 79.7 78.64
AT1G06230.2 Thale cress nucleus 78.48 75.72
KRH27020 Soybean nucleus 45.06 51.55
KRH22304 Soybean nucleus 44.38 51.25
Solyc10g008070.2.1 Tomato nucleus 24.49 50.0
PGSC0003DMT400027387 Potato nucleus 38.57 49.48
GSMUA_Achr10P... Banana nucleus, plastid 29.63 48.99
VIT_12s0028g02510.t01 Wine grape nucleus 42.35 47.86
GSMUA_Achr11P... Banana nucleus 27.06 47.28
GSMUA_Achr7P09350_001 Banana nucleus, plastid 31.26 44.94
Zm00001d008922_P001 Maize plastid 28.96 43.67
TraesCS3D01G146600.1 Wheat nucleus, plastid 28.82 42.09
TraesCS3B01G164100.1 Wheat nucleus, plastid 28.96 41.96
EES02258 Sorghum plastid 25.3 41.93
TraesCS3A01G140500.1 Wheat nucleus, plastid 28.82 41.76
Bra025948.1-P Field mustard mitochondrion 23.27 41.55
KRH25703 Soybean nucleus 47.9 40.5
GSMUA_Achr1P11660_001 Banana nucleus 27.88 40.16
Bra008074.1-P Field mustard nucleus, plastid 21.24 40.05
Os02t0250300-01 Rice nucleus 34.51 38.87
Bra016586.1-P Field mustard nucleus, plastid 23.14 38.86
Os01t0214300-01 Rice cytosol, nucleus 8.66 38.55
HORVU6Hr1G045030.1 Barley nucleus 32.48 37.91
HORVU6Hr1G045070.4 Barley nucleus 32.61 37.89
TraesCS6D01G177700.1 Wheat cytosol, plastid 32.34 37.64
Zm00001d016131_P006 Maize nucleus 33.96 37.41
Bra031004.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 17.86 37.18
OQU84709 Sorghum nucleus 35.05 36.38
KRH55813 Soybean nucleus 48.31 36.24
Zm00001d053427_P007 Maize nucleus 30.31 32.8
Bra038624.1-P Field mustard nucleus 10.42 31.82
Bra005311.1-P Field mustard cytosol, plastid 9.88 31.33
Bra024402.1-P Field mustard nucleus, plastid 22.06 29.91
Bra006068.1-P Field mustard nucleus 21.65 29.14
Zm00001d039369_P004 Maize plastid 27.47 21.66
Bra012810.1-P Field mustard cytosol 10.28 21.35
Bra005383.1-P Field mustard nucleus 10.69 20.52
Bra025262.1-P Field mustard nucleus 14.07 19.22
Bra039088.1-P Field mustard nucleus 16.91 19.2
Bra022044.1-P Field mustard nucleus 12.31 17.33
Bra034451.1-P Field mustard cytosol 10.28 14.39
Bra035848.1-P Field mustard nucleus 15.56 9.66
Protein Annotations
Gene3D:1.20.1270.220Gene3D:1.20.920.10MapMan:15.5.54EnsemblPlantsGene:Bra030643EnsemblPlants:Bra030643.1EnsemblPlants:Bra030643.1-P
InterPro:BromodomainInterPro:Bromodomain-like_sfncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:GTE_bromoInterPro:IPR001487InterPro:IPR027353InterPro:IPR036427InterPro:IPR038336UniProt:M4EPC3
InterPro:NET_domInterPro:NET_sfPFAM:PF00439PFAM:PF17035PRINTS:PR00503PFscan:PS50014
PFscan:PS51525PANTHER:PTHR22880PANTHER:PTHR22880:SF147SMART:SM00297SUPFAM:SSF47370UniParc:UPI0002547113
SEG:seg:::::
Description
AT1G06230 (E=2e-244) GTE4 | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4); DNA binding
Coordinates
chrA08:-:20970007..20972479
Molecular Weight (calculated)
80913.2 Da
IEP (calculated)
5.525
GRAVY (calculated)
-0.794
Length
739 amino acids
Sequence
(BLAST)
001: MASEPVNGEG TDGAREKQKI KVYTRKGKGQ RKLSPFFAFD GDSREKPEGD SENNRQSLAQ ESQKSPVSSV AKDSAEAPSE KVIDKPLMEA LTEAEPQDDT
101: SLSLAPTDKS VIQPVSDPLN QEDANAFTGD KSVEVPSQSN TAQDDVNTVV VDENSIKELP KMIVDKKAIE ASAEDADTVV VVDKNPIEVS SDEDVHVVDA
201: DNLIKESQRD AQQPAGVASD SAQSIHATAS ESMPTEEDVD GRIKIHVPSK SKQEKEEIRK KLEDQLNVVR DLVKKIEDKE GEIGACNDSR LLASADINNG
301: GGRILPGLAS DGLPREVIRT PRHLNQLSVS VLENAHGVSE HVEKEKRTPK ANQFYRTSEF LLGDKLPPAE SNKKSKSSAK KHGGEAGHGF TAGSKVFKNC
401: SALLERLMKH KHGWVFNAPV DVKGLGLHDY FAIIEHPMDL GTVKSALANN LYKSPREFAE DVRLTFHNAM TYNPPGQDVH IMAEVLLQMF EERWAVIEAD
501: YNRQLRFASG YEMNLPASTM RSRLGPTMPP PPISVSNTMD WSGLPSDLQH PKPTTTPGRT PTSARTPALK KPKANEPNKR DMTYEEKQKL SGQLQNLPPE
601: KLDAIVQIVN KRNTAVKLRD EEIEVDIDSV DPETLWELDR FVTNYKKGLS KKKRRAELAI QAKAEAERNS QQQMAPAPVA HEFSREGGNT AKKTVPTQVP
701: SQVEKQNNET SRSSSSSSSS SSSSSSSDSD SDSSSSSGS
Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
Arabidopsis Description
GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.