Factsheet for PGSC0003DMT400027387

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008070.2.1	Tomato	nucleus	60.76	96.69
CDY15568	Canola	nucleus	31.08	56.47
KRH22304	Soybean	nucleus	58.51	52.66
GSMUA_Achr10P...	Banana	nucleus, plastid	40.62	52.35
KRH27020	Soybean	nucleus	58.33	52.01
VIT_12s0028g02510.t01	Wine grape	nucleus	58.51	51.53
GSMUA_Achr11P...	Banana	nucleus	37.67	51.3
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	43.4	48.64
TraesCS3D01G146600.1	Wheat	nucleus, plastid	39.41	44.86
TraesCS3A01G140500.1	Wheat	nucleus, plastid	39.41	44.51
TraesCS3B01G164100.1	Wheat	nucleus, plastid	39.24	44.31
Zm00001d008922_P001	Maize	plastid	37.67	44.29
CDY06203	Canola	nucleus	48.26	43.17
EES02258	Sorghum	plastid	33.33	43.05
CDY09981	Canola	nucleus	47.74	43.04
Os01t0214300-01	Rice	cytosol, nucleus	12.33	42.77
Bra032431.1-P	Field mustard	nucleus	48.26	42.31
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	22.4	41.48
GSMUA_Achr1P11660_001	Banana	nucleus	35.94	40.35
CDX86532	Canola	nucleus	48.44	39.57
PGSC0003DMT400061998	Potato	cytosol	7.99	39.32
PGSC0003DMT400039787	Potato	nucleus	47.57	38.92
Os02t0250300-01	Rice	nucleus	43.92	38.57
Bra030643.1-P	Field mustard	nucleus	49.48	38.57
HORVU6Hr1G045030.1	Barley	nucleus	42.19	38.39
PGSC0003DMT400032373	Potato	nucleus	49.31	38.33
HORVU6Hr1G045070.4	Barley	nucleus	42.19	38.21
TraesCS6D01G177700.1	Wheat	cytosol, plastid	41.84	37.95
Bra015485.1-P	Field mustard	nucleus	49.31	37.92
Zm00001d016131_P006	Maize	nucleus	43.75	37.56
AT1G06230.2	Thale cress	nucleus	49.31	37.08
KRH25703	Soybean	nucleus	55.73	36.73
OQU84709	Sorghum	nucleus	44.97	36.38
Zm00001d053427_P007	Maize	nucleus	40.8	34.41
CDY72432	Canola	cytosol	29.69	33.86
CDY68605	Canola	cytosol	31.25	32.79
KRH55813	Soybean	nucleus	55.03	32.18
PGSC0003DMT400008041	Potato	nucleus	29.86	28.57
PGSC0003DMT400078795	Potato	nucleus	26.74	26.01
Zm00001d039369_P004	Maize	plastid	36.46	22.41
PGSC0003DMT400044321	Potato	nucleus	14.06	21.49
PGSC0003DMT400039290	Potato	nucleus	27.78	20.36
PGSC0003DMT400018643	Potato	nucleus	19.27	18.32
PGSC0003DMT400052108	Potato	nucleus	21.18	16.74

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150
GO:GO:0009294	GO:GO:0009987	GO:GO:0045931	GO:GO:0048364	InterPro:GTE_bromo	InterPro:IPR001487
InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M1APM2	InterPro:NET_dom	InterPro:NET_sf
PFAM:PF00439	PFAM:PF17035	EnsemblPlantsGene:PGSC0003DMG400010560	PGSC:PGSC0003DMG400010560	EnsemblPlants:PGSC0003DMT400027387	PRINTS:PR00503
PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370
UniParc:UPI000295F0E0	SEG:seg	:	:	:	:

Description

Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010560]

Coordinates

chr10:-:3351058..3359119

Molecular Weight (calculated)

64726.3 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.956

Length

576 amino acids

Sequence
(BLAST)

001: MNGENRGSEE QQNMTESKVY RRKSFKGLNN IGDGLQHPHS EILGMDVKSS RKIVGLRLEA ALEGSSSLNR ALTLENTGIF AGSGQENSAR INLTFKSKRE
101: MRELRRKLQS ELDLVRSLVK KIEAKDVQKT GPGIDKDSGV RRVHSDLSKM GQHLESRPLN QLSVSVLENS HDVGENVEKE KRTPKVNQFY RNSEFLLAKD
201: KIPPAESNKK SKSNAKKVSG PESGPGIELW KFSNQMLKNC RALLERLMKH KHGWVFNQPV DTEGLGLHDY FDIIKNPMDL GTVKSRLETN LYKSPKEFAE
301: DVRLTFQNAM TYNPKGQDVY MMAEQLSKIF EEKWPTIEAD YMRELRLSMD SEVSLQTPTS KKPPPLRPSG MRKTLDRSES TTRPVGSKTK SVAVSQSGRT
401: TAPKKPKAKD PNKREMTYDE KQKLSTSLQN LPSEKLENVV QIIKKRNSSL CQQDDEIEVD IDSVDTETLW ELDRFVIYYK KSLSKNKRKT ELADQEKKET
501: EQNVQEKNAN PVVVEIPKES KAEEKGTSSN LAQLENQGKN ISQPGSSSTD SVSSSSDSDS ESSSGGASDA EHSPKS

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.