Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061991 | Potato | cytoskeleton, cytosol, nucleus | 69.23 | 26.05 |
| PGSC0003DMT400039787 | Potato | nucleus | 70.94 | 11.79 |
| PGSC0003DMT400032373 | Potato | nucleus | 51.28 | 8.1 |
| PGSC0003DMT400027387 | Potato | nucleus | 39.32 | 7.99 |
| PGSC0003DMT400008041 | Potato | nucleus | 29.06 | 5.65 |
| PGSC0003DMT400044321 | Potato | nucleus | 13.68 | 4.24 |
| PGSC0003DMT400078795 | Potato | nucleus | 16.24 | 3.21 |
| PGSC0003DMT400039290 | Potato | nucleus | 18.8 | 2.8 |
| PGSC0003DMT400052108 | Potato | nucleus | 17.09 | 2.74 |
| PGSC0003DMT400018643 | Potato | nucleus | 11.97 | 2.31 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400061998 | EnsemblPlantsGene:PGSC0003DMG400024127 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 | InterPro:NET_dom |
| InterPro:NET_sf | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF147 | PFAM:PF17035 | PFscan:PS51525 | PGSC:PGSC0003DMG400024127 |
| UniParc:UPI0002952604 | UniProt:M1C8C4 | MapMan:35.2 | : | : | : |
Description
Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024127]
Coordinates
chr1:-:15106781..15110967
Molecular Weight (calculated)
13131.7 Da
IEP (calculated)
5.899
GRAVY (calculated)
-0.259
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MILLIFEAAL YTAINSDIEA ALQIIKKRNS TFYQHDDEIE LDIDSVDAES FWELERFVTN YKKNLSKQKR KAELALQARG IARTAPVMNS APMVAGALNS
101: NTGNCRPGNL FEKVPNL
101: NTGNCRPGNL FEKVPNL
001: MASGPIAGGG VSKTKHKWSD SGNKSQKRSK PTVANSNSLG LEDNHQMMKI SLSSISKLEV RNLKRKLQAE LEEVRSLIKR LEPQGNNFAP VPNKKLKTAN
101: GGKKGGVHGA AADKGTVQIL KSCNNLLTKL MKHKSGWIFN TPVDVVTLGL HDYHNIIKEP MDLGTVKTRL SKSLYKSPLE FAEDVRLTFN NAMLYNPVGH
201: DVYHMAEILL NLFEEKWVPL ETQYELLIRK QQPVRDIDFH APVSTNTHNV EALPLPAPTP SLSPPPPPKV VENRTLERAE SMTNPVKPAV LPVVPEKLVE
301: EASANRDLTF DEKRQLSEDL QDLPYDKLEA VVQIIKKRTP ELSQQDDEIE LDIDSLDLET LWELFRFVTE YKESLSKKKE EQGLDSERDA ESFHNSVHES
401: NTLVTGLESS KVTELGEILI LKIVSSSSIL VV
101: GGKKGGVHGA AADKGTVQIL KSCNNLLTKL MKHKSGWIFN TPVDVVTLGL HDYHNIIKEP MDLGTVKTRL SKSLYKSPLE FAEDVRLTFN NAMLYNPVGH
201: DVYHMAEILL NLFEEKWVPL ETQYELLIRK QQPVRDIDFH APVSTNTHNV EALPLPAPTP SLSPPPPPKV VENRTLERAE SMTNPVKPAV LPVVPEKLVE
301: EASANRDLTF DEKRQLSEDL QDLPYDKLEA VVQIIKKRTP ELSQQDDEIE LDIDSLDLET LWELFRFVTE YKESLSKKKE EQGLDSERDA ESFHNSVHES
401: NTLVTGLESS KVTELGEILI LKIVSSSSIL VV
Arabidopsis Description
GTE3Transcription factor GTE3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.